RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 CCDC190Q86UF4 302 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 ATCAYQ86WG3 371 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 CELF2-AS1Q8N7Q2 184 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 CHAC2Q8WUX2 184 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 NEIL2Q969S2 332 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 MGLLQ99685 303 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 PIP5K1AQ99755 562 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 CDCA4Q9BXL8 241 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 EMILIN2Q9BXX0 1053 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 EHD1Q9H4M9 534 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 TMEM38AQ9H6F2 299 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 TRIM39Q9HCM9 518 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 FBXL12Q9NXK8 326 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 EHD3Q9NZN3 535 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 FTSJ1Q9UET6 329 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 KLHL3Q9UH77 587 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 HCN4Q9Y3Q4 1203 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 ATG2AQ2TAZ0 1938 aa17.55■□□□□ 0.4
PCDHA1-202ENST00000394633 CCDC85CA6NKD9 419 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 PSMD11O00231 422 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 SSX4O60224 188 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 CATP04040 527 aaKnown RBP17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 GJA1P17302 382 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 PRIM2P49643 509 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 CDK6Q00534 326 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 IFITM2Q01629 132 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 ZNF763Q0D2J5 394 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 GANABQ14697 944 aaKnown RBP17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 ASTLQ6HA08 431 aaPredicted RBP17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 SLCO4C1Q6ZQN7 724 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 TMPRSS11BQ86T26 416 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 TMC8Q8IU68 726 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 RAVER1Q8IY67 606 aaKnown RBP17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 Q8N9G6 341 aaPredicted RBP17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 OR5AK3PQ8NH89 298 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 GEMIN6Q8WXD5 167 aaKnown RBP17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 HCFC1R1Q9NWW0 138 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 MKLN1Q9UL63 735 aa17.54■□□□□ 0.4
PCDHA1-202ENST00000394633 EFCAB10A6NFE3 127 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 TTC36A6NLP5 189 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 ARHGAP33O14559 1287 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 CCL16O15467 120 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 CCNB2O95067 398 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 SNX4O95219 450 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 SOX6P35712 828 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 ETV3P41162 512 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 HMGA2P52926 109 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 CTSCP53634 463 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 CDC42P60953 191 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 FOXD4Q12950 439 aaPredicted RBP17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 DMC1Q14565 340 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 SSX1Q16384 188 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 CRB2Q5IJ48 1285 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 MED27Q6P2C8 311 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 KLHL17Q6TDP4 642 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 GDPD4Q6W3E5 623 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 ARMCX6Q7L4S7 300 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 RNF130Q86XS8 419 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 NINQ8N4C6 2090 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 IL17RDQ8NFM7 739 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 TMEM159Q96B96 161 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 NUAK2Q9H093 628 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 KIF26AQ9ULI4 1882 aaPredicted RBP17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 PLXND1Q9Y4D7 1925 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 MAP4K5Q9Y4K4 846 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 ZAR1LA6NP61 321 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 CTDSP2O14595 271 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 GADD45GO95257 159 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 RECKO95980 971 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 LRG1P02750 347 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 FURINP09958 794 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 E2F2Q14209 437 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 PRSS53Q2L4Q9 553 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 SPANXN2Q5MJ10 180 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 C1QTNF12Q5T7M4 302 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 COMMD6Q7Z4G1 85 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 CLIP4Q8N3C7 705 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 OXR1Q8N573 874 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 RASGEF1AQ8N9B8 481 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 AQP11Q8NBQ7 271 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 MAPKAP1Q9BPZ7 522 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 KCNS3Q9BQ31 491 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 RIOK2Q9BVS4 552 aaKnown RBP17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 CNOT2Q9NZN8 540 aaKnown RBP17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 SLC25A13Q9UJS0 675 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 SH2B3Q9UQQ2 575 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 SNX8Q9Y5X2 465 aa17.53■□□□□ 0.4
PCDHA1-202ENST00000394633 PNMA8CA0A1B0GUJ8 204 aa17.52■□□□□ 0.4
PCDHA1-202ENST00000394633 SH3D21A4FU49 640 aa17.52■□□□□ 0.4
PCDHA1-202ENST00000394633 CCRL2O00421 344 aa17.52■□□□□ 0.4
PCDHA1-202ENST00000394633 GPR37L1O60883 481 aa17.52■□□□□ 0.4
PCDHA1-202ENST00000394633 GPX5O75715 221 aa17.52■□□□□ 0.4
PCDHA1-202ENST00000394633 EPCAMP16422 314 aa17.52■□□□□ 0.4
PCDHA1-202ENST00000394633 CHMP24386 653 aa17.52■□□□□ 0.4
PCDHA1-202ENST00000394633 VIPR1P32241 457 aa17.52■□□□□ 0.4
PCDHA1-202ENST00000394633 CNR2P34972 360 aa17.52■□□□□ 0.4
PCDHA1-202ENST00000394633 SLC7A9P82251 487 aa17.52■□□□□ 0.4
PCDHA1-202ENST00000394633 KRR1Q13601 381 aaKnown RBP17.52■□□□□ 0.4
PCDHA1-202ENST00000394633 SLC5A12Q1EHB4 618 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms