RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 BTBD3Q9Y2F9 522 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 CORINQ9Y5Q5 1042 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 SEMA3DO95025 777 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ETHE1O95571 254 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 TP53P04637 393 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF182P17025 639 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 SOAT1P35610 550 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 TSPAN7P41732 249 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ITGA1P56199 1179 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 C21orf59P57076 290 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 FAM209BQ5JX69 171 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 CATSPEREQ5SY80 951 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 GCNT6Q5T4J0 391 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 TRIM40Q6P9F5 258 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF765Q7L2R6 523 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 CAMKMTQ7Z624 323 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 DSG4Q86SJ6 1040 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 KRT78Q8N1N4 520 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 SLC5A11Q8WWX8 675 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 COQ8BQ96D53 544 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 TRIM39Q9HCM9 518 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 AHSPQ9NZD4 102 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 RAPGEFL1Q9UHV5 662 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 FBXO10Q9UK96 956 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ASF1AQ9Y294 204 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 FOXE1O00358 373 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 XPNPEP2O43895 674 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 MMP20O60882 483 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 IFNA14P01570 189 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 EPHX1P07099 455 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ITIH1P19827 911 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ITGB7P26010 798 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 FMO3P31513 532 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 PCGF2P35227 344 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 WASP42768 502 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 RAE1P78406 368 aaKnown RBP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 KDM4DQ6B0I6 523 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 XAF1Q6GPH4 301 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 P3H2Q8IVL5 708 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ZC3H7AQ8IWR0 971 aaKnown RBP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 CXorf40AQ8TE69 158 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ZFP90Q8TF47 636 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 MARC2Q969Z3 335 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 CITED4Q96RK1 184 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 OR51B5Q9H339 312 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 GPN2Q9H9Y4 310 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 GIMAP4Q9NUV9 329 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ATP6V1HQ9UI12 483 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 PIPSLA2A3N6 862 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 ADAMDEC1O15204 470 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 JRKO75564 520 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 CISD3P0C7P0 127 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 C6P13671 934 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 SHHQ15465 462 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF829Q3KNS6 432 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-204ENST00000392003 KIAA1614Q5VZ46 1190 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 ADNP2Q6IQ32 1131 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 NXPE4Q6UWF7 544 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 PIWIL3Q7Z3Z3 882 aaKnown RBP9.23□□□□□ -0.93
COL6A3-204ENST00000392003 COMMD6Q7Z4G1 85 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 KCTD20Q7Z5Y7 419 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 NLRP8Q86W28 1048 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 SNX29P2Q8IUI4 249 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 NAGSQ8N159 534 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF540Q8NDQ6 660 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 TMIEQ8NEW7 156 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 VN1R2Q8NFZ6 395 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 OR4K1Q8NGD4 311 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 MUL1Q969V5 352 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 RAD51AP1Q96B01 352 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 LRRC3BQ96PB8 259 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 SLC35A5Q9BS91 424 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 DOHHQ9BU89 302 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 MIEF1Q9NQG6 463 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 DMRT3Q9NQL9 472 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 CYB5R1Q9UHQ9 305 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 A8MUA0 341 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 SAP18O00422 153 aaKnown RBP9.23□□□□□ -0.93
COL6A3-204ENST00000392003 NPC1O15118 1278 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 APEHP13798 732 aaKnown RBP9.23□□□□□ -0.93
COL6A3-204ENST00000392003 NPPBP16860 134 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 CXCR4P61073 352 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 KCNC4Q03721 635 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 RBBP4Q09028 425 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 FAM214AQ32MH5 1076 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 HNRNPA1L2Q32P51 320 aaKnown RBP9.23□□□□□ -0.93
COL6A3-204ENST00000392003 GALNT18Q6P9A2 607 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 SETD7Q8WTS6 366 aaKnown RBP9.23□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF566Q969W8 418 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 ARRDC3Q96B67 414 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 INTS12Q96CB8 462 aaKnown RBP9.23□□□□□ -0.93
COL6A3-204ENST00000392003 FUNDC2Q9BWH2 189 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 SLC27A6Q9Y2P4 619 aa9.23□□□□□ -0.93
COL6A3-204ENST00000392003 C17orf113A0A1B0GUU1 675 aa9.22□□□□□ -0.93
COL6A3-204ENST00000392003 C1QTNF3-AMACRE9PGA6 284 aa9.22□□□□□ -0.93
COL6A3-204ENST00000392003 C5orf67F2Z3F1 127 aa9.22□□□□□ -0.93
COL6A3-204ENST00000392003 TNFRSF11BO00300 401 aa9.22□□□□□ -0.93
COL6A3-204ENST00000392003 YY2O15391 372 aa9.22□□□□□ -0.93
COL6A3-204ENST00000392003 RGS10O43665 173 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms