RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 E2F2Q14209 437 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 SLBPQ14493 270 aaKnown RBP eCLIP14.84□□□□□ -0.03
CCDC40-202ENST00000374876 PAGE2BQ5JRK9 111 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 CATSPEREQ5SY80 951 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 ZNF765Q7L2R6 523 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 GPR155Q7Z3F1 870 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 CAMKMTQ7Z624 323 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 GALNT10Q86SR1 603 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 OR9A1PQ8NGU1 263 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 TBC1D20Q96BZ9 403 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 NRBF2Q96F24 287 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 EFCAB11Q9BUY7 163 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 SPATA9Q9BWV2 254 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 FANCEQ9HB96 536 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 VNN3Q9NY84 501 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 SH3BP4Q9P0V3 963 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 ATXN10Q9UBB4 475 aa14.84□□□□□ -0.03
CCDC40-202ENST00000374876 TMEFF2Q9UIK5 374 aaPredicted RBP14.84□□□□□ -0.03
CCDC40-202ENST00000374876 H3BMQ9 156 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 hCG_2039718K7EN88 272 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 NPPBP16860 134 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 IDSP22304 550 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 TRIM23P36406 574 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 CD47Q08722 323 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 VEZF1Q14119 521 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 HIST2H2ACQ16777 129 aaPredicted RBP14.83□□□□□ -0.03
CCDC40-202ENST00000374876 ZC3H12BQ5HYM0 836 aaKnown RBP14.83□□□□□ -0.03
CCDC40-202ENST00000374876 HIST2H2AA3Q6FI13 130 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 HSH2DQ96JZ2 352 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 ZNF514Q96K75 400 aaPredicted RBP14.83□□□□□ -0.03
CCDC40-202ENST00000374876 COG8Q96MW5 612 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 PHF12Q96QT6 1004 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 DCUN1D5Q9BTE7 237 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 TRIM39Q9HCM9 518 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 PNMA8BQ9ULN7 279 aaPredicted RBP14.83□□□□□ -0.03
CCDC40-202ENST00000374876 VPS4AQ9UN37 437 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 HEMK1Q9Y5R4 338 aaPredicted RBP14.83□□□□□ -0.03
CCDC40-202ENST00000374876 CFAP54Q96N23 3096 aa14.83□□□□□ -0.03
CCDC40-202ENST00000374876 C4orf47A7E2U8 309 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 BCKDKO14874 412 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 SLC16A6O15403 523 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 C1GALT1C1LP0DN25 315 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 JUNBP17275 347 aaPredicted RBP14.83□□□□□ -0.04
CCDC40-202ENST00000374876 DPTQ07507 201 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 LRRC74AQ0VAA2 488 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 TOP3AQ13472 1001 aaPredicted RBP14.83□□□□□ -0.04
CCDC40-202ENST00000374876 IL18R1Q13478 541 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 DCTN2Q13561 401 aaKnown RBP14.83□□□□□ -0.04
CCDC40-202ENST00000374876 FZD2Q14332 565 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 CTU2Q2VPK5 515 aaKnown RBP14.83□□□□□ -0.04
CCDC40-202ENST00000374876 C10orf62Q5T681 223 aaPredicted RBP14.83□□□□□ -0.04
CCDC40-202ENST00000374876 ZNF691Q5VV52 312 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 GALNT18Q6P9A2 607 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 CBLL1Q75N03 491 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 EIF3MQ7L2H7 374 aaKnown RBP14.83□□□□□ -0.04
CCDC40-202ENST00000374876 VTCN1Q7Z7D3 282 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 HEATR4Q86WZ0 1026 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 OR4A15Q8NGL6 344 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 OR13F1Q8NGS4 319 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 COQ8BQ96D53 544 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 CNDP2Q96KP4 475 aaKnown RBP14.83□□□□□ -0.04
CCDC40-202ENST00000374876 DOK1Q99704 481 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 SGPP1Q9BX95 441 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 GABARAPL1Q9H0R8 117 aa14.83□□□□□ -0.04
CCDC40-202ENST00000374876 TDRD6O60522 2096 aaKnown RBP14.83□□□□□ -0.04
CCDC40-202ENST00000374876 SPTY2D1-AS1A0A0U1RR47 76 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 PIPSLA2A3N6 862 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 FOXE1O00358 373 aaPredicted RBP14.82□□□□□ -0.04
CCDC40-202ENST00000374876 POP7O75817 140 aaKnown RBP14.82□□□□□ -0.04
CCDC40-202ENST00000374876 ATE1O95260 518 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 ITGAMP11215 1152 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 DNAJA1P31689 397 aaKnown RBP14.82□□□□□ -0.04
CCDC40-202ENST00000374876 GABARAPL2P60520 117 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 ISL1P61371 349 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 YPEL5P62699 121 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 ZNF763Q0D2J5 394 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 C16orf72Q14CZ0 275 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 LAPTM4AQ15012 233 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 UAP1L1Q3KQV9 507 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 CRTC3Q6UUV7 619 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 ENPP7Q6UWV6 458 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 GALNT5Q7Z7M9 940 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 PIK3C3Q8NEB9 887 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 FAM174AQ8TBP5 190 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 CXorf40BQ96DE9 158 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 WDR34Q96EX3 536 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 ZDHHC5Q9C0B5 715 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 OCEL1Q9H607 264 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 WDR26Q9H7D7 661 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 TMEM9BQ9NQ34 198 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 GPR27Q9NS67 375 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 TMEM9Q9P0T7 183 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 KLF15Q9UIH9 416 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 SH2B3Q9UQQ2 575 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 TP53BP1Q12888 1972 aaPredicted RBP14.82□□□□□ -0.04
CCDC40-202ENST00000374876 PIEZO1Q92508 2521 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 CABIN1Q9Y6J0 2220 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 C17orf113A0A1B0GUU1 675 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 C1orf226A1L170 272 aa14.82□□□□□ -0.04
CCDC40-202ENST00000374876 RNASET2O00584 256 aaKnown RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms