RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 UBAP2Q5T6F2 1119 aaKnown RBP20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 C1QL3Q5VWW1 255 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 FJX1Q86VR8 437 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 KCNC2Q96PR1 638 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 CSF3RQ99062 836 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 TBCDQ9BTW9 1192 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 FUT8Q9BYC5 575 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 PNO1Q9NRX1 252 aaKnown RBP20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 KCMF1Q9P0J7 381 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 DMGDHQ9UI17 866 aaKnown RBP20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 DIDO1Q9BTC0 2240 aaKnown RBP20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 UTP20O75691 2785 aaKnown RBP20.27■□□□□ 0.83
CCDC28B-201ENST00000373602 A0A096LPK6 155 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 SYNDIG1LA6NDD5 238 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 CTNSO60931 367 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 WISP2O76076 250 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 KLHL2O95198 593 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 EPB42P16452 691 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 COL8A1P27658 744 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 PPP2R1BP30154 601 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 SERPINB1P30740 379 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 CYB561P49447 251 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 GPR143P51810 404 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 NAA30Q147X3 362 aaPredicted RBP20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 SETDB1Q15047 1291 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 TMEM35AQ53FP2 167 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 ZNF793Q6ZN11 406 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 GALNTL5Q7Z4T8 443 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 NOA1Q8NC60 698 aaKnown RBP20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 OR7G3Q8NG95 312 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 GPR78Q96P69 363 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 LYRM4Q9HD34 91 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 ADAP2Q9NPF8 381 aa20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 ZNF223Q9UK11 482 aaPredicted RBP20.26■□□□□ 0.83
CCDC28B-201ENST00000373602 TRBV11-1A0A0K0K1C0 115 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 KLK8O60259 260 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 SLC25A12O75746 678 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 SCELO95171 688 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 ALDOAP04075 364 aaKnown RBP20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 PCNAP12004 261 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 ATP5A1P25705 553 aaKnown RBP20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 TYK2P29597 1187 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 SERPINB8P50452 374 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 HLCSP50747 726 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 ZRSR2Q15696 482 aaKnown RBP20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 ZNF800Q2TB10 664 aaPredicted RBP eCLIP20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 GRHL2Q6ISB3 625 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 CHSY3Q70JA7 882 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 CLNKQ7Z7G1 428 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 ZNF227Q86WZ6 799 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 TEX9Q8N6V9 391 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 ZNF592Q92610 1267 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 NCLNQ969V3 563 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 VMP1Q96GC9 406 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 FRMD6Q96NE9 622 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 TSPYL1Q9H0U9 437 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 CDC42EP4Q9H3Q1 356 aaKnown RBP20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 ADGRE2Q9UHX3 823 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 CROCCQ5TZA2 2017 aa20.25■□□□□ 0.83
CCDC28B-201ENST00000373602 RTCAO00442 366 aaKnown RBP20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 FCHO1O14526 889 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 ZG16O60844 167 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 TGFB1P01137 390 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 GFAPP14136 432 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 ALDH18A1P54886 795 aaKnown RBP20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 ALDH6A1Q02252 535 aaKnown RBP20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 ELAVL1Q15717 326 aaKnown RBP20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 MAPKAPK3Q16644 382 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 PFKFB4Q16877 469 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 KLC3Q6P597 504 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 ACOT4Q8N9L9 421 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 FAM98AQ8NCA5 519 aaKnown RBP20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 THAP3Q8WTV1 239 aaPredicted RBP20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 CMTM7Q96FZ5 175 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 MAPKAP1Q9BPZ7 522 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 FBXW2Q9UKT8 454 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 TSC22D4Q9Y3Q8 395 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 ANGPTL3Q9Y5C1 460 aa20.24■□□□□ 0.83
CCDC28B-201ENST00000373602 NME2P1O60361 137 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 SH3BGRLO75368 114 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 MLYCDO95822 493 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 NME2P22392 152 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 HIST1H1TP22492 207 aaPredicted RBP20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 RBPJQ06330 500 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 PCBP2Q15366 365 aaKnown RBP eCLIP20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 AP5B1Q2VPB7 878 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 KRTCAP3Q53RY4 240 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 DEPDC1Q5TB30 811 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 KHDRBS2Q5VWX1 349 aaKnown RBP20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 LIPJQ5W064 366 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 PNPLA5Q7Z6Z6 429 aaPredicted RBP20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 TMEM132CQ8N3T6 1108 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 MNS1Q8NEH6 495 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 SLC44A1Q8WWI5 657 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 ISL2Q96A47 359 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 GPR137Q96N19 417 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 OR51B5Q9H339 312 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 PRM3Q9NNZ6 103 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 VTI1BQ9UEU0 232 aa20.23■□□□□ 0.83
CCDC28B-201ENST00000373602 NBPF19A0A087WUL8 3843 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms