RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 C7orf34Q96L11 122 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 MED18Q9BUE0 208 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 MFSD1Q9H3U5 465 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 AKTIPQ9H8T0 292 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 IL1R1P14778 569 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 HLA-DMAP28067 261 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 FRS2Q8WU20 508 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 CHTF18Q8WVB6 975 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 KCNK2O95069 426 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 SLC35G4P0C7Q5 338 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 S1PR1P21453 382 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 GPX6P59796 221 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 BATFQ16520 125 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 NAT8LQ8N9F0 302 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 RAB3CQ96E17 227 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 C17orf62Q9BQA9 187 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 URM1Q9BTM9 101 aaKnown RBP12.18□□□□□ -0.46
COL6A3-203ENST00000353578 LOC285095A0A1B0GVY8 99 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 SMIM6P0DI80 62 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 SNCAP37840 140 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 NDST2P52849 883 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 PRKAG1P54619 331 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 UBE2NLQ5JXB2 153 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 GPR149Q86SP6 731 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 DCNP07585 359 aaKnown RBP12.18□□□□□ -0.46
COL6A3-203ENST00000353578 CD53P19397 219 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 RPS19P39019 145 aaKnown RBP12.18□□□□□ -0.46
COL6A3-203ENST00000353578 CASP3P42574 277 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 RAB1AP62820 205 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 SCGB2A2Q13296 93 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 SCARF1Q14162 830 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 METTL2BQ6P1Q9 378 aaKnown RBP12.18□□□□□ -0.46
COL6A3-203ENST00000353578 CEP68Q76N32 757 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 C1orf52Q8N6N3 182 aaKnown RBP12.18□□□□□ -0.46
COL6A3-203ENST00000353578 SLC25A32Q9H2D1 315 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 SACM1LQ9NTJ5 587 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 ERVK13-1Q9NX77 482 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 BCAS1O75363 584 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-203ENST00000353578 RPL22L1Q6P5R6 122 aaKnown RBP12.18□□□□□ -0.46
COL6A3-203ENST00000353578 PPP1R13LQ8WUF5 828 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 BTN2A3PQ96KV6 586 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 TMEM100Q9NV29 134 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 IMPA1P29218 277 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 HCAR3P49019 387 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 MRPS5P82675 430 aaKnown RBP12.18□□□□□ -0.46
COL6A3-203ENST00000353578 GRAMD2AQ8IUY3 354 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 XAGE5Q8WWM1 108 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 CTRCQ99895 268 aa12.18□□□□□ -0.46
COL6A3-203ENST00000353578 AGO3Q9H9G7 860 aaKnown RBP12.18□□□□□ -0.46
COL6A3-203ENST00000353578 CARS2Q9HA77 564 aaKnown RBP12.18□□□□□ -0.46
COL6A3-203ENST00000353578 ERVFC1P60507 584 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CBX2Q14781 532 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 ACTBL2Q562R1 376 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 TMEM121BQ9BXQ6 578 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 SLC25A31Q9H0C2 315 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 NLKQ9UBE8 527 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 HCCSP53701 268 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 COX15Q7KZN9 410 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CMIPQ8IY22 773 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 PROKR2Q8NFJ6 384 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 SEC22CQ9BRL7 303 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 NTN4Q9HB63 628 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 ELOA3DA6NLF2 546 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 SCAMP3O14828 347 aaKnown RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 WNT9AO14904 365 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 UPP2O95045 317 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 DBIP07108 87 aaKnown RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CXCL8P10145 99 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 NFYBP25208 207 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 PBLDP30039 288 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 MAGEB1P43366 347 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 RAB35Q15286 201 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 ELOA3BQ3SY89 546 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 C16orf59Q7L2K0 433 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF808Q8N4W9 903 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CLRN3Q8NCR9 226 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 SLC30A7Q8NEW0 376 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 ELOA3Q8NG57 546 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 RHEBL1Q8TAI7 183 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 DERL2Q9GZP9 239 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 SPG21Q9NZD8 308 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 WASHC1A8K0Z3 465 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 WASH3PC4AMC7 463 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CD1EP15812 388 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 RPL17P18621 184 aaKnown RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 MC4RP32245 332 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 EPHX2P34913 555 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 TMEM236Q5W0B7 351 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 WASH2PQ6VEQ5 465 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 HEATR1Q9H583 2144 aaKnown RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 AGO1Q9UL18 857 aaKnown RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 ADORA2AP29274 412 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 RPS3AP61247 264 aaKnown RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 DBPQ10586 325 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-203ENST00000353578 DYRK1AQ13627 763 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 TANGO2Q6ICL3 276 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 TOP6BLQ8N6T0 577 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 CLDN22Q8N7P3 220 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 FAM156AQ8NDB6 213 aa12.17□□□□□ -0.46
COL6A3-203ENST00000353578 COL26A1Q96A83 441 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms