RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 MBNL1Q9NR56 388 aaKnown RBP18.48■□□□□ 0.55
COL9A3-201ENST00000343916 PRAMEF33A0A0G2JMD5 474 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 PRAMEF10O60809 474 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 CLPXO76031 633 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 RPL3P39023 403 aaKnown RBP18.47■□□□□ 0.55
COL9A3-201ENST00000343916 TAS2R38P59533 333 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 RELAQ04206 551 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 GANABQ14697 944 aaKnown RBP18.47■□□□□ 0.55
COL9A3-201ENST00000343916 NR1D2Q14995 579 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 PROX2Q3B8N5 592 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 OR10G2Q8NGC3 310 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 OR5K2Q8NHB8 316 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 HRASLS5Q96KN8 279 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 ZNF300Q96RE9 604 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-201ENST00000343916 PITX2Q99697 317 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 TMEM38AQ9H6F2 299 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 SERGEFQ9UGK8 458 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 RAB23Q9ULC3 237 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 MID1O15344 667 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 RGS10O43665 173 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 POU2F1P14859 743 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 MAGEA10P43363 369 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-201ENST00000343916 CLCA4Q14CN2 919 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 EXOC3L2Q2M3D2 409 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-201ENST00000343916 DSG4Q86SJ6 1040 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 PLD3Q8IV08 490 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 OR9Q2Q8NGE9 314 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 DNASE1L2Q92874 299 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 HDAC8Q9BY41 377 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 RNF6Q9Y252 685 aa18.47■□□□□ 0.55
COL9A3-201ENST00000343916 ZNF12P17014 697 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 MAGEA8P43361 318 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 CLCNKAP51800 687 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 MAPK12P53778 367 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 RBBP4Q09028 425 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 GPM6BQ13491 265 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 KHDRBS2Q5VWX1 349 aaKnown RBP18.46■□□□□ 0.55
COL9A3-201ENST00000343916 ADAMTSL4Q6UY14 1074 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 KLK6Q92876 244 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 MENTQ9BUN1 341 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 GABARAPL3Q9BY60 117 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 WDR37Q9Y2I8 494 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 ACVR2AP27037 513 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 PDGFRLQ15198 375 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 RPS26P11Q5JNZ5 115 aaPredicted RBP18.46■□□□□ 0.55
COL9A3-201ENST00000343916 DEPDC1Q5TB30 811 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 METRNLQ641Q3 311 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 TNFAIP8L2Q6P589 184 aaPredicted RBP18.46■□□□□ 0.55
COL9A3-201ENST00000343916 SLC44A2Q8IWA5 706 aaPredicted RBP18.46■□□□□ 0.55
COL9A3-201ENST00000343916 LGI4Q8N135 537 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 MTERF3Q96E29 417 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 CHFRQ96EP1 664 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 ACOT13Q9NPJ3 140 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 RHCGQ9UBD6 479 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 HEATR5BQ9P2D3 2071 aa18.46■□□□□ 0.55
COL9A3-201ENST00000343916 MYO9BQ13459 2157 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 A0A0G2JN53 185 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 TOR1BO14657 336 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 LCKP06239 509 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 GJA4P35212 333 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 VBP1P61758 197 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 RPA4Q13156 261 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 DUSP7Q16829 419 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 ADPRMQ3LIE5 342 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 VITQ6UXI7 678 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 CEACAM20Q6UY09 585 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 ABHD11Q8NFV4 315 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 OR4C15Q8NGM1 316 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 NDNFQ8TB73 568 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 UCN3Q969E3 161 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 OSGEPL1Q9H4B0 414 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 THAP10Q9P2Z0 257 aaPredicted RBP18.45■□□□□ 0.54
COL9A3-201ENST00000343916 PRR23AA6NEV1 266 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 E9PQ18 207 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 M0R129 80 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 PCDH17O14917 1159 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 DNAJB5O75953 348 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 FCARP24071 287 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 BSGP35613 385 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 IDH2P48735 452 aaKnown RBP18.45■□□□□ 0.54
COL9A3-201ENST00000343916 BCAP31P51572 246 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 HSPB3Q12988 150 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 ZNF630Q2M218 657 aaPredicted RBP18.45■□□□□ 0.54
COL9A3-201ENST00000343916 CRB2Q5IJ48 1285 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 AGBL4Q5VU57 503 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 IKBIPQ70UQ0 350 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 P3H2Q8IVL5 708 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 LINC01555Q8NAE3 123 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 TM4SF18Q96CE8 201 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 MS4A8Q9BY19 250 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 INIPQ9NRY2 104 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 SNX11Q9Y5W9 270 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 AP1M2Q9Y6Q5 423 aa18.45■□□□□ 0.54
COL9A3-201ENST00000343916 KIF26AQ9ULI4 1882 aaPredicted RBP18.45■□□□□ 0.54
COL9A3-201ENST00000343916 A0A1W2PPV9 198 aa18.44■□□□□ 0.54
COL9A3-201ENST00000343916 PPM1DO15297 605 aa18.44■□□□□ 0.54
COL9A3-201ENST00000343916 GABARAPO95166 117 aa18.44■□□□□ 0.54
COL9A3-201ENST00000343916 KAT7O95251 611 aa18.44■□□□□ 0.54
COL9A3-201ENST00000343916 PAK4O96013 591 aaPredicted RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms