RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CPNE5Q9HCH3 593 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 RASSF1Q9NS23 344 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 TRGV5A0A0B4J1U4 118 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 HCN1O60741 890 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PRAMEF2O60811 474 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF883P0CG24 379 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PRG2P13727 222 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 SLC6A2P23975 617 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PTPN6P29350 595 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PRKAA2P54646 552 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 TLE4Q04727 773 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PLEKHS1Q5SXH7 462 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 SLC13A5Q86YT5 568 aaPredicted RBP8.04□□□□□ -1.12
HMGB1-203ENST00000341423 RAB1CQ92928 201 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 TPD52L3Q96J77 140 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 ZMAT2Q96NC0 199 aaKnown RBP8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PANX1Q96RD7 426 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 SHCBP1LQ9BZQ2 653 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 ACTR6Q9GZN1 396 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 DDX47Q9H0S4 455 aaKnown RBP8.04□□□□□ -1.12
HMGB1-203ENST00000341423 GPRC5BQ9NZH0 403 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 FADS3Q9Y5Q0 445 aa8.04□□□□□ -1.12
HMGB1-203ENST00000341423 PRORSD1PA6NEY8 169 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 LOC730098B7Z3J9 87 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 PPIHO43447 177 aaKnown RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 TIMM8AO60220 97 aaPredicted RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 GALR3O60755 368 aaPredicted RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 MT-CO1P00395 513 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 GPR68Q15743 365 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 GPR19Q15760 415 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 CRB2Q5IJ48 1285 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 PGBD2Q6P3X8 592 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 TMPRSS9Q7Z410 1059 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 TMEM173Q86WV6 379 aaPredicted RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 EPHX4Q8IUS5 362 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF555Q8NEP9 628 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 OR5M9Q8NGP3 310 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 DTD2Q96FN9 168 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 MRI1Q9BV20 369 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 MAGEE1Q9HCI5 957 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 ABHD10Q9NUJ1 306 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 IL17BQ9UHF5 180 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 PFDN2Q9UHV9 154 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 FOXD3Q9UJU5 478 aaPredicted RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 UTS2RQ9UKP6 389 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 LOC100653049A0A140TA62 436 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 HTRA2O43464 458 aaPredicted RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 KRT34O76011 436 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 XKP51811 444 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 ART1P52961 327 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 MLLT10P55197 1068 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 POU6F2P78424 691 aaPredicted RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 EVX2Q03828 476 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 ENPEPQ07075 957 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 MGAT3Q09327 533 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 GAB1Q13480 694 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 HES1Q14469 280 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 PTGR1Q14914 329 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 OR1C1Q15619 314 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 NHSL2Q5HYW2 709 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 SSX8Q7RTT4 187 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 GALNTL5Q7Z4T8 443 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 SPACA3Q8IXA5 215 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 CLEC4FQ8N1N0 589 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 SLC35F6Q8N357 371 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 C9orf72Q96LT7 481 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 MYRFLQ96LU7 910 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 SLC38A2Q96QD8 506 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 MOV10Q9HCE1 1003 aaKnown RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 ENY2Q9NPA8 101 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 NOSIPQ9Y314 301 aaKnown RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 AQP7O14520 342 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 ACADLP28330 430 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 HLA-FP30511 346 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 IDUAP35475 653 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 RPL38P63173 70 aaKnown RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 SLC30A6Q6NXT4 461 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 AGTRAPQ6RW13 159 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 SIAH1Q8IUQ4 282 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 SLC37A2Q8TED4 501 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF566Q969W8 418 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 COQ8BQ96D53 544 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 NDNQ99608 321 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 BARHL1Q9BZE3 327 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 OBP2BQ9NPH6 170 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 WRAP73Q9P2S5 460 aaPredicted RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 PPLO60437 1756 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 CCDC22O60826 627 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 NBL1P41271 181 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 DCAF7P61962 342 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 USP46P62068 366 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 GAS6Q14393 721 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 PRAMEF20Q5VT98 475 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 ZCCHC7Q8N3Z6 543 aaKnown RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 STEAP2Q8NFT2 490 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 OR52K2Q8NGK3 314 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF689Q96CS4 500 aaPredicted RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 FARSBQ9NSD9 589 aaKnown RBP8.03□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF180Q9UJW8 692 aa8.03□□□□□ -1.12
HMGB1-203ENST00000341423 B3GNT3Q9Y2A9 372 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms