RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ZNF440Q8IYI8 595 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 LINC00471Q8N535 108 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 PDLIM5Q96HC4 596 aaKnown RBP9.71□□□□□ -0.85
USP54-201ENST00000339859 PCDH10Q9P2E7 1040 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 NPIPA1Q9UND3 350 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 CDC14CA4D256 554 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 SCAMP2O15127 329 aaKnown RBP9.71□□□□□ -0.85
USP54-201ENST00000339859 ZNF823P16415 610 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 PDHA2P29803 388 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 ADARP55265 1226 aaKnown RBP9.71□□□□□ -0.85
USP54-201ENST00000339859 DCDP81605 110 aaKnown RBP9.71□□□□□ -0.85
USP54-201ENST00000339859 CDK6Q00534 326 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 NKAIN2Q5VXU1 208 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 DNM1P34Q6PK57 102 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 YTHDF3Q7Z739 585 aaKnown RBP9.71□□□□□ -0.85
USP54-201ENST00000339859 TMEM151BQ8IW70 566 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.71□□□□□ -0.85
USP54-201ENST00000339859 OR4C6Q8NH72 309 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 FER1L6-AS2Q96M78 137 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 MAP3K3Q99759 626 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 RBM4BQ9BQ04 359 aaKnown RBP9.71□□□□□ -0.85
USP54-201ENST00000339859 RBM4Q9BWF3 364 aaKnown RBP9.71□□□□□ -0.85
USP54-201ENST00000339859 MEAF6Q9HAF1 191 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 TMEM30AQ9NV96 361 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 CITO14578 2027 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 OTOFQ9HC10 1997 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 H7C0S8 307 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 SGK494L7N484 410 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 AHSA1O95433 338 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 IL33O95760 270 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 KCTD11Q693B1 232 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 SLC30A6Q6NXT4 461 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.71□□□□□ -0.85
USP54-201ENST00000339859 SNIP1Q8TAD8 396 aaKnown RBP9.71□□□□□ -0.85
USP54-201ENST00000339859 AGAP11Q8TF27 550 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 NSUN5Q96P11 429 aaKnown RBP9.71□□□□□ -0.85
USP54-201ENST00000339859 CGREF1Q99674 301 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 DMRT3Q9NQL9 472 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 PACSIN3Q9UKS6 424 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 WDR45Q9Y484 360 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 NOX1Q9Y5S8 564 aa9.71□□□□□ -0.85
USP54-201ENST00000339859 ZNFX1Q9P2E3 1918 aaKnown RBP9.71□□□□□ -0.86
USP54-201ENST00000339859 GJE1A6NN92 205 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 MPZL2O60487 215 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 KCNK5O95279 499 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 LINGO3P0C6S8 592 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 TRA2BP62995 288 aaKnown RBP9.71□□□□□ -0.86
USP54-201ENST00000339859 OLR1P78380 273 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 LASP1Q14847 261 aaKnown RBP9.71□□□□□ -0.86
USP54-201ENST00000339859 AGBL4Q5VU57 503 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 OTUD1Q5VV17 481 aaPredicted RBP9.71□□□□□ -0.86
USP54-201ENST00000339859 RINLQ6ZS11 566 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 GIPC3Q8TF64 312 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 KLHL1Q9NR64 748 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 LIPT1Q9Y234 373 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 OR1D5P58170 312 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 EFR3AQ14156 821 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 YOD1Q5VVQ6 348 aaPredicted RBP9.71□□□□□ -0.86
USP54-201ENST00000339859 RNF130Q86XS8 419 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 C16orf78Q8WTQ4 265 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 THAP3Q8WTV1 239 aaPredicted RBP9.71□□□□□ -0.86
USP54-201ENST00000339859 LRRC58Q96CX6 371 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 SMURF2Q9HAU4 748 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 GIN1Q9NXP7 522 aa9.71□□□□□ -0.86
USP54-201ENST00000339859 SHISA7A6NL88 538 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 WASHC1A8K0Z3 465 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 MAGP20916 626 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 CDH12P55289 794 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 ABRAXAS2Q15018 415 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 ANKRD26P1Q6NSI1 321 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 TMEM107Q6UX40 140 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 WASH2PQ6VEQ5 465 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 RPS27LQ71UM5 84 aaKnown RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 ISCA2Q86U28 154 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 FAM110BQ8TC76 370 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 ASB11Q8WXH4 323 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 LYSMD1Q96S90 227 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 NAA11Q9BSU3 229 aaPredicted RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 GRIP2Q9C0E4 1043 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 WSB2Q9NYS7 404 aaPredicted RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 RFPL3O75679 317 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 KLHL18O94889 574 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 PGM3O95394 542 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 CPNE6O95741 557 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 FGF3P11487 239 aaPredicted RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 PSMB9P28065 219 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 MPLP40238 635 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 SYT16Q17RD7 645 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 PYCR3Q53H96 274 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 GALNT15Q8N3T1 639 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 MINDY1Q8N5J2 469 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 ZNF483Q8TF39 744 aaPredicted RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 PDXPQ96GD0 296 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 ALOXE3Q9BYJ1 711 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 TPT1P8Q9HAU6 139 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 NAALAD2Q9Y3Q0 740 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 A0A0A6YYC8 382 aaPredicted RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 NSG1A0A0A6YYJ2 146 aa9.7□□□□□ -0.86
USP54-201ENST00000339859 I3L1I5 382 aaPredicted RBP9.7□□□□□ -0.86
USP54-201ENST00000339859 PROM1O43490 865 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms