RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 LILRA2Q8N149 483 aa14.68□□□□□ -0.06
LIMS1-202ENST00000338045 ELF4Q99607 663 aaPredicted RBP14.68□□□□□ -0.06
LIMS1-202ENST00000338045 FAIM2Q9BWQ8 316 aa14.68□□□□□ -0.06
LIMS1-202ENST00000338045 TAS2R9Q9NYW1 312 aa14.68□□□□□ -0.06
LIMS1-202ENST00000338045 PCDHGB4Q9UN71 923 aa14.68□□□□□ -0.06
LIMS1-202ENST00000338045 LOC105369274A0A096LPK9 316 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 LOC102723532A0A0G2JNH3 316 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 URADA6NGE7 173 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 H0YGG7 62 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 ABCB1P08183 1280 aaPredicted RBP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 UMPSP11172 480 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 ST6GAL1P15907 406 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 CERS1P27544 350 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 EPHA4P54764 986 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 POLE2P56282 527 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 PCBP4P57723 403 aaKnown RBP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 ARF3P61204 181 aaPredicted RBP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 MTX3Q5HYI7 312 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 OR4N4Q8N0Y3 316 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 NSMCE2Q96MF7 247 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 TRAPPC9Q96Q05 1148 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 RAB33BQ9H082 229 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 SLAMF7Q9NQ25 335 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 SUSD2Q9UGT4 822 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 CORO2BQ9UQ03 480 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 CACNA1EQ15878 2313 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 A0A1W2PR48 441 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 TMEM221A6NGB7 291 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 M0R296 226 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 ZSCAN9O15535 394 aaPredicted RBP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 HRO43593 1189 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 SH3BP5O60239 455 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 CAPNS1P04632 268 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 ZNF888P0CJ79 500 aaPredicted RBP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 SOX11P35716 441 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 ALDH9A1P49189 494 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 SNRPNP63162 240 aaKnown RBP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 BNIP3Q12983 259 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 PEAR1Q5VY43 1037 aaPredicted RBP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 CPZQ66K79 652 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 TRIML2Q8N7C3 387 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 TMEM105Q8N8V8 129 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 C19orf47Q8N9M1 422 aaKnown RBP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 OR5P2Q8WZ92 322 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 RERGQ96A58 199 aaPredicted RBP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 PKP2Q99959 881 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 EFHD1Q9BUP0 239 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 SPATA9Q9BWV2 254 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 ROGDIQ9GZN7 287 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 CHST8Q9H2A9 424 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 C1GALT1Q9NS00 363 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 ACSS1Q9NUB1 689 aaPredicted RBP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 LYARQ9NX58 379 aaKnown RBP14.67□□□□□ -0.06
LIMS1-202ENST00000338045 FBXO4Q9UKT5 387 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 ATG4BQ9Y4P1 393 aa14.67□□□□□ -0.06
LIMS1-202ENST00000338045 SDK1Q7Z5N4 2213 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 PDPK1O15530 556 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 KCNK5O95279 499 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 CDH3P22223 829 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 PSMA4P25789 261 aaKnown RBP14.66□□□□□ -0.06
LIMS1-202ENST00000338045 ARRB1P49407 418 aaPredicted RBP14.66□□□□□ -0.06
LIMS1-202ENST00000338045 MVDP53602 400 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 BTN3A2P78410 334 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 SUZ12Q15022 739 aaKnown RBP14.66□□□□□ -0.06
LIMS1-202ENST00000338045 MLC1Q15049 377 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 CYP51A1Q16850 503 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 ARL10Q8N8L6 244 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 TMEM102Q8N9M5 508 aaPredicted RBP14.66□□□□□ -0.06
LIMS1-202ENST00000338045 PAPD5Q8NDF8 572 aaKnown RBP14.66□□□□□ -0.06
LIMS1-202ENST00000338045 UCN3Q969E3 161 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 ZC3H10Q96K80 434 aaKnown RBP14.66□□□□□ -0.06
LIMS1-202ENST00000338045 COPS7BQ9H9Q2 264 aaPredicted RBP14.66□□□□□ -0.06
LIMS1-202ENST00000338045 FAM60AQ9NP50 221 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 EPHA6Q9UF33 1036 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 C15orf41Q9Y2V0 281 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 LRRC42Q9Y546 428 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 RNF215Q9Y6U7 377 aa14.66□□□□□ -0.06
LIMS1-202ENST00000338045 CXCR6O00574 342 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 PROM1O43490 865 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 NUDT21O43809 227 aaKnown RBP14.65□□□□□ -0.06
LIMS1-202ENST00000338045 GMNNO75496 209 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 RGNQ15493 299 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 WLSQ5T9L3 541 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 OGFRL1Q5TC84 451 aaPredicted RBP14.65□□□□□ -0.06
LIMS1-202ENST00000338045 TMEM214Q6NUQ4 689 aaKnown RBP14.65□□□□□ -0.06
LIMS1-202ENST00000338045 ERICH5Q6P6B1 374 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 ABHD13Q7L211 337 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 DGLUCYQ7Z3D6 616 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 ZZZ3Q8IYH5 903 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 ZNF655Q8N720 491 aaPredicted RBP14.65□□□□□ -0.06
LIMS1-202ENST00000338045 PSMA8Q8TAA3 256 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 ZBED6CLQ96FA7 236 aaPredicted RBP14.65□□□□□ -0.06
LIMS1-202ENST00000338045 SERINC2Q96SA4 455 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 SLC35A5Q9BS91 424 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 NEUROD4Q9HD90 331 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 GPATCH2Q9NW75 528 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 C5AR2Q9P296 337 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 TMEM131Q92545 1883 aa14.65□□□□□ -0.06
LIMS1-202ENST00000338045 RHPN2P1A8MT19 583 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms