RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SAP25Q8TEE9 199 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 SNX21Q969T3 373 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 RFT1Q96AA3 541 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 CNRIP1Q96F85 164 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-201ENST00000326004 CDHR1Q96JP9 859 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF559Q9BR84 538 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 CACNG6Q9BXT2 260 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 LRRC2Q9BYS8 371 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 GFRA4Q9GZZ7 299 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 NAPBQ9H115 298 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 FNDC4Q9H6D8 234 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-201ENST00000326004 C3orf14Q9HBI5 128 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 SPG21Q9NZD8 308 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 THEGQ9P2T0 379 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 MTRRQ9UBK8 725 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 TRPC4Q9UBN4 977 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 PLCL2Q9UPR0 1127 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 TMED7Q9Y3B3 224 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 ZHX2Q9Y6X8 837 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 TNIKQ9UKE5 1360 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 UACAQ9BZF9 1416 aa2.82□□□□□ -1.96
HMGB1-201ENST00000326004 GTPBP10A4D1E9 387 aaKnown RBP2.81□□□□□ -1.96
HMGB1-201ENST00000326004 LMO7DNF2Z398 122 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 SOCS3O14543 225 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 MLNRO43193 412 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 TNFSF12O43508 249 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 IDH3BO43837 385 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 ECE2O60344 883 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 RTN2O75298 545 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 NME6O75414 186 aaPredicted RBP2.81□□□□□ -1.96
HMGB1-201ENST00000326004 NXPH4O95158 308 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 GAS8-AS1O95177 125 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 GOSR1O95249 250 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 FGF19O95750 216 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 PKLRP30613 574 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 CTNNB1P35222 781 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 NDST2P52849 883 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 ELAVL2Q12926 359 aaKnown RBP2.81□□□□□ -1.96
HMGB1-201ENST00000326004 CEACAM7Q14002 265 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 GCKRQ14397 625 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 STXBP2Q15833 593 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 UPP1Q16831 310 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 TAF1BQ53T94 588 aaPredicted RBP2.81□□□□□ -1.96
HMGB1-201ENST00000326004 SIGLEC15Q6ZMC9 328 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 KRTAP7-1Q8IUC3 87 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF440Q8IYI8 595 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 SLC43A2Q8N370 569 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 NAT8LQ8N9F0 302 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 CD99L2Q8TCZ2 262 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 SLC35C1Q96A29 364 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 ULK4Q96C45 1275 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF689Q96CS4 500 aaPredicted RBP2.81□□□□□ -1.96
HMGB1-201ENST00000326004 BPIFA2Q96DR5 249 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 ATXN7L3BQ96GX2 97 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 PRICKLE1Q96MT3 831 aaPredicted RBP2.81□□□□□ -1.96
HMGB1-201ENST00000326004 RBM4BQ9BQ04 359 aaKnown RBP2.81□□□□□ -1.96
HMGB1-201ENST00000326004 UBAC1Q9BSL1 405 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 TRIM15Q9C019 465 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 SLC5A7Q9GZV3 580 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 MTIF3Q9H2K0 278 aaKnown RBP2.81□□□□□ -1.96
HMGB1-201ENST00000326004 AKIRIN1Q9H9L7 192 aaPredicted RBP2.81□□□□□ -1.96
HMGB1-201ENST00000326004 PNPLA3Q9NST1 481 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 NUDT4Q9NZJ9 180 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 UBQLN2Q9UHD9 624 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 STX8Q9UNK0 236 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 AFF2P51816 1311 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 SNED1Q8TER0 1413 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 UHRF1BP1LA0JNW5 1464 aa2.81□□□□□ -1.96
HMGB1-201ENST00000326004 ZCCHC11Q5TAX3 1644 aaKnown RBP2.81□□□□□ -1.96
HMGB1-201ENST00000326004 RNF17Q9BXT8 1623 aaKnown RBP2.81□□□□□ -1.96
HMGB1-201ENST00000326004 ABCA5Q8WWZ7 1642 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 ZFYVE16Q7Z3T8 1539 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 ARHGEF12Q9NZN5 1544 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 KDM5BQ9UGL1 1544 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 GPRASP1Q5JY77 1395 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 UMODL1Q5DID0 1318 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 IGHV4-30-2A0A087WSY4 118 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 IGHV3-20A0A0C4DH32 117 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 G3V2L1 256 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 H0YIG0 161 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 CACNB4O00305 520 aaPredicted RBP2.8□□□□□ -1.96
HMGB1-201ENST00000326004 INPP4BO15327 924 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 SIGLEC5O15389 551 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 P2RX6O15547 441 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 LRCH4O75427 683 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 THEGLP0DJG4 465 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 AOC1P19801 751 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 ACKR3P25106 362 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 CALRP27797 417 aaKnown RBP2.8□□□□□ -1.96
HMGB1-201ENST00000326004 SERPINB6P35237 376 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 CASP3P42574 277 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 KIAA1024LP59773 190 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 KIAA0141Q14154 515 aaPredicted RBP2.8□□□□□ -1.96
HMGB1-201ENST00000326004 LY6DQ14210 128 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 MS4A18Q3C1V0 323 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 C2orf76Q3KRA6 126 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 KCTD11Q693B1 232 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 ALKBH5Q6P6C2 394 aaKnown RBP2.8□□□□□ -1.96
HMGB1-201ENST00000326004 TMEM270Q6UE05 265 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 CD164L2Q6UWJ8 174 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms