RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 CDK3Q00526 305 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 TMEM173Q86WV6 379 aaPredicted RBP12.96□□□□□ -0.33
RFFL-201ENST00000315249 KLHDC8AQ8IYD2 350 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 ACVR1CQ8NER5 493 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 OR14L1PQ8NHC6 308 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 HUS1BQ8NHY5 278 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.96□□□□□ -0.336e-7■■■■■ 54.5
RFFL-201ENST00000315249 MGME1Q9BQP7 344 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 LGR4Q9BXB1 951 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 ZBP1Q9H171 429 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 ACTR10Q9NZ32 417 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 RHCGQ9UBD6 479 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 DNMT3AQ9Y6K1 912 aaPredicted RBP12.96□□□□□ -0.33
RFFL-201ENST00000315249 RCBTB2O95199 551 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 IL4RP24394 825 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 OR12D2P58182 307 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 SIM1P81133 766 aaPredicted RBP12.96□□□□□ -0.33
RFFL-201ENST00000315249 TRIM61Q5EBN2 209 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 SLC35F1Q5T1Q4 408 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 PNCKQ6P2M8 343 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 PARS2Q7L3T8 475 aaKnown RBP12.96□□□□□ -0.33
RFFL-201ENST00000315249 LGI4Q8N135 537 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 SVOPLQ8N434 492 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 SGCDQ92629 289 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 SLCO2A1Q92959 643 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 ARRDC3Q96B67 414 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 NARS2Q96I59 477 aaKnown RBP12.96□□□□□ -0.33
RFFL-201ENST00000315249 EFCAB7A8K855 629 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 MRPL49Q13405 166 aaKnown RBP12.96□□□□□ -0.33
RFFL-201ENST00000315249 WDR60Q8WVS4 1066 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 CRYGNQ8WXF5 182 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 ASB6Q9NWX5 421 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 TSC22D4Q9Y3Q8 395 aa12.96□□□□□ -0.33
RFFL-201ENST00000315249 STRCQ7RTU9 1775 aa12.96□□□□□ -0.34
RFFL-201ENST00000315249 AOC1P19801 751 aa12.96□□□□□ -0.34
RFFL-201ENST00000315249 PDCD4Q53EL6 469 aaKnown RBP12.96□□□□□ -0.34
RFFL-201ENST00000315249 ZNF550Q7Z398 422 aa12.96□□□□□ -0.34
RFFL-201ENST00000315249 S1PR4O95977 384 aa12.96□□□□□ -0.34
RFFL-201ENST00000315249 IL12RB1P42701 662 aa12.96□□□□□ -0.34
RFFL-201ENST00000315249 NR0B1P51843 470 aaKnown RBP12.96□□□□□ -0.34
RFFL-201ENST00000315249 DOC2AQ14183 400 aa12.96□□□□□ -0.34
RFFL-201ENST00000315249 IER5LQ5T953 404 aa12.96□□□□□ -0.34
RFFL-201ENST00000315249 PARM1Q6UWI2 310 aa12.96□□□□□ -0.34
RFFL-201ENST00000315249 SDR16C5Q8N3Y7 309 aa12.96□□□□□ -0.34
RFFL-201ENST00000315249 C1orf216Q8TAB5 229 aa12.96□□□□□ -0.34
RFFL-201ENST00000315249 VILLO15195 856 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 CSTBP04080 98 aaKnown RBP12.95□□□□□ -0.34
RFFL-201ENST00000315249 TTKP33981 857 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 C5orf22Q49AR2 442 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 RAB43Q86YS6 212 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 AQP11Q8NBQ7 271 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 TMEM74Q96NL1 305 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 RBP7Q96R05 134 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 RDH14Q9HBH5 336 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 SLC9B1P1A6NJY1 282 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 GPR89AB7ZAQ6 455 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 KCNJ13O60928 360 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 GPR89BP0CG08 455 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 TIMP2P16035 220 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 TGFBR2P37173 567 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 OR1E2P47887 323 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 LEPRP48357 1165 aaKnown RBP12.95□□□□□ -0.34
RFFL-201ENST00000315249 AFF3P51826 1226 aaKnown RBP12.95□□□□□ -0.34
RFFL-201ENST00000315249 SLC6A17Q9H1V8 727 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 POPDC3Q9HBV1 291 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 PREBQ9HCU5 417 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 CXXC1Q9P0U4 656 aaPredicted RBP12.95□□□□□ -0.34
RFFL-201ENST00000315249 NUP205Q92621 2012 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 EFCAB9A8MZ26 197 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 FOXN2P32314 431 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 ARHGDIBP52566 201 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 AKIRIN2Q53H80 203 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 LIPIQ6XZB0 460 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 GALNT12Q8IXK2 581 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 CPXM2Q8N436 756 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 KRTCAP2Q8N6L1 136 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 HSPBAP1Q96EW2 488 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 ZFYVE21Q9BQ24 234 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 TMEM109Q9BVC6 243 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 ULBP3Q9BZM4 244 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 COMMD3-BMI1R4GMX3 469 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 IFI30P13284 250 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 PORP16435 677 aaPredicted RBP12.95□□□□□ -0.34
RFFL-201ENST00000315249 EDNRAP25101 427 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 BNIP1Q12981 228 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 PERM1Q5SV97 790 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 NAT6Q93015 286 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 C8orf4Q9NR00 106 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 RPH3AQ9Y2J0 694 aaPredicted RBP12.95□□□□□ -0.34
RFFL-201ENST00000315249 ZNF638Q14966 1978 aaKnown RBP12.95□□□□□ -0.34
RFFL-201ENST00000315249 ZNF888P0CJ79 500 aaPredicted RBP12.95□□□□□ -0.34
RFFL-201ENST00000315249 UQCRC2P22695 453 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 EMX2Q04743 252 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 KLHL22Q53GT1 634 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 DCP2Q8IU60 420 aaKnown RBP12.95□□□□□ -0.34
RFFL-201ENST00000315249 APLFQ8IW19 511 aaPredicted RBP12.95□□□□□ -0.34
RFFL-201ENST00000315249 ARL14Q8N4G2 192 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.95□□□□□ -0.34
RFFL-201ENST00000315249 POC5Q8NA72 575 aa12.95□□□□□ -0.34
RFFL-201ENST00000315249 NPLQ9BXD5 320 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms