RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TERF2Q15554 542 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 UAP1Q16222 522 aaPredicted RBP18.22■□□□□ 0.51
LIME1-201ENST00000309546 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.22■□□□□ 0.51
LIME1-201ENST00000309546 ZNF572Q7Z3I7 529 aaPredicted RBP18.22■□□□□ 0.51
LIME1-201ENST00000309546 CPSF7Q8N684 471 aaKnown RBP18.22■□□□□ 0.51
LIME1-201ENST00000309546 KCTD4Q8WVF5 259 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 NXNL1Q96CM4 212 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 VMP1Q96GC9 406 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 ATOH8Q96SQ7 321 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 ADAP2Q9NPF8 381 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 DAPP1Q9UN19 280 aa18.22■□□□□ 0.51
LIME1-201ENST00000309546 RTCAO00442 366 aaKnown RBP18.21■□□□□ 0.51
LIME1-201ENST00000309546 ZNF24P17028 368 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 RCN2Q14257 317 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 TBCCQ15814 346 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 C3AR1Q16581 482 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 MROH9Q5TGP6 573 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 SREK1Q8WXA9 508 aaKnown RBP18.21■□□□□ 0.51
LIME1-201ENST00000309546 UBE2E3Q969T4 207 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 KCNC2Q96PR1 638 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 CCDC77Q9BR77 488 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 LRRC1Q9BTT6 524 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 MS4A8Q9BY19 250 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 PRDM7Q9NQW5 492 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 TINAGQ9UJW2 476 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 ZNF223Q9UK11 482 aaPredicted RBP18.21■□□□□ 0.51
LIME1-201ENST00000309546 ACOT9Q9Y305 439 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 CLDN16Q9Y5I7 305 aa18.21■□□□□ 0.51
LIME1-201ENST00000309546 ARHGAP10A1A4S6 786 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 K7EPI3 171 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 CYR61O00622 381 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 CDK2AP1O14519 115 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 ITGA10O75578 1167 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 TRHRP34981 398 aaPredicted RBP18.2■□□□□ 0.5
LIME1-201ENST00000309546 STX4Q12846 297 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 DDX39BQ13838 428 aaKnown RBP18.2■□□□□ 0.5
LIME1-201ENST00000309546 KRTCAP3Q53RY4 240 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 MED27Q6P2C8 311 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 MTFR2Q6P444 385 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 ZNF793Q6ZN11 406 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 MRGPRGQ86SM5 289 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 ZNF227Q86WZ6 799 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 MYLK4Q86YV6 388 aaPredicted RBP18.2■□□□□ 0.5
LIME1-201ENST00000309546 CYP4Z2PQ8N1L4 340 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 TMEM156Q8N614 296 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 SRFBP1Q8NEF9 429 aaKnown RBP18.2■□□□□ 0.5
LIME1-201ENST00000309546 ZNF473Q8WTR7 871 aaKnown RBP18.2■□□□□ 0.5
LIME1-201ENST00000309546 UBTD2Q8WUN7 234 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 ITLN2Q8WWU7 325 aaPredicted RBP18.2■□□□□ 0.5
LIME1-201ENST00000309546 C16orf45Q96MC5 204 aaPredicted RBP18.2■□□□□ 0.5
LIME1-201ENST00000309546 ROGDIQ9GZN7 287 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 SNX15Q9NRS6 342 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 ANGPTL3Q9Y5C1 460 aa18.2■□□□□ 0.5
LIME1-201ENST00000309546 A0A087X1B8 175 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 SYCE1LA8MT33 242 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 SAP18O00422 153 aaKnown RBP18.19■□□□□ 0.5
LIME1-201ENST00000309546 ZNHIT1O43257 154 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 PRKNO60260 465 aaPredicted RBP18.19■□□□□ 0.5
LIME1-201ENST00000309546 TGFB1P01137 390 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 ESRRAP11474 423 aaPredicted RBP18.19■□□□□ 0.5
LIME1-201ENST00000309546 GFAPP14136 432 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 EPB42P16452 691 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 SSR2P43308 183 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 MEOX1P50221 254 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 HSF1Q00613 529 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 GUCY2DQ02846 1103 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 ELAVL1Q15717 326 aaKnown RBP18.19■□□□□ 0.5
LIME1-201ENST00000309546 UBE3DQ7Z6J8 389 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 CENPLQ8N0S6 344 aaPredicted RBP18.19■□□□□ 0.5
LIME1-201ENST00000309546 TMEM132CQ8N3T6 1108 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 TEX9Q8N6V9 391 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 ACOT4Q8N9L9 421 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 MAPKAP1Q9BPZ7 522 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 TBCDQ9BTW9 1192 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 TRIM45Q9H8W5 580 aaPredicted RBP18.19■□□□□ 0.5
LIME1-201ENST00000309546 LIN28AQ9H9Z2 209 aaKnown RBP18.19■□□□□ 0.5
LIME1-201ENST00000309546 LYRM4Q9HD34 91 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 ZDHHC18Q9NUE0 388 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 KLF13Q9Y2Y9 288 aaPredicted RBP18.19■□□□□ 0.5
LIME1-201ENST00000309546 CLCA3PQ9Y6N3 262 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 SPACA6W5XKT8 324 aa18.19■□□□□ 0.5
LIME1-201ENST00000309546 ASNA1O43681 348 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 CTNSO60931 367 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 LDB3O75112 727 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 URI1O94763 535 aaPredicted RBP18.18■□□□□ 0.5
LIME1-201ENST00000309546 C2P06681 752 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 ABOP16442 354 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 ATP5A1P25705 553 aaKnown RBP18.18■□□□□ 0.5
LIME1-201ENST00000309546 PHBP35232 272 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 RFC3P40938 356 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 CASP2P42575 452 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 SSR4P51571 173 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 ID2Q02363 134 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 FAM83EQ2M2I3 478 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 AP5B1Q2VPB7 878 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 GRHL2Q6ISB3 625 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 C16orf47Q6ZP98 133 aaPredicted RBP18.18■□□□□ 0.5
LIME1-201ENST00000309546 SPPL2CQ8IUH8 684 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 SIAH3Q8IW03 269 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 LAS2Q8IYD9 372 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms