RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 OR10H3O60404 316 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 POP7O75817 140 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 GLUD1P00367 558 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CRATP43155 626 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ENTPD1P49961 510 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 RAB5CP51148 216 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 GTF2A2P52657 109 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 FCGRTP55899 365 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SPIBQ01892 262 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CHRNEQ04844 493 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 HNF4GQ14541 408 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TAF1CQ15572 869 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 BRAT1Q6PJG6 821 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PARGQ86W56 976 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 NUDT13Q86X67 352 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ZBTB2Q8N680 514 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 MSANTD3Q96H12 275 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 OR5B12Q96R08 314 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SPOCK3Q9BQ16 436 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 HEPHQ9BQS7 1158 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TAPBPLQ9BX59 468 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 LGR4Q9BXB1 951 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 NLKQ9UBE8 527 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ADAM29Q9UKF5 820 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 HCN2Q9UL51 889 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 DOCK11Q5JSL3 2073 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PRAMEF33A0A0G2JMD5 474 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 BTBD17A6NE02 478 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 A8MT66 165 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SLC1A7O00341 560 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SHOXO15266 292 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 INPPL1O15357 1258 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 B4GALT5O43286 388 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PRAMEF10O60809 474 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 H1F0P07305 194 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TSPAN8P19075 237 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 HK1P19367 917 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 POLR2CP19387 275 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 MARCKSL1P49006 195 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TAS2R40P59535 323 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 RAB8AP61006 207 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PLGLB1Q02325 96 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TARDBPQ13148 414 aaKnown RBP eCLIP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 GTF2H2Q13888 395 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 RAB35Q15286 201 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 IL17AQ16552 155 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 GTF2H2CQ6P1K8 395 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 OR4C15Q8NGM1 316 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SLC7A6Q92536 515 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PHYHIPLQ96FC7 376 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF764Q96H86 408 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 FBRSQ9HAH7 460 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TRPV4Q9HBA0 871 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 NDUFAF4Q9P032 175 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SEC14L3Q9UDX4 400 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 IKZF2Q9UKS7 526 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SIGLEC1Q9BZZ2 1709 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TRPM3Q9HCF6 1732 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ANXA2P2A6NMY6 339 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TSPAN4O14817 238 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ANXA2P07355 339 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 IFNGR1P15260 489 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF37AP17032 561 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CLDN8P56748 225 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CAP1Q01518 475 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ARL16Q0P5N6 197 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 BAK1Q16611 211 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 UBE2UQ5VVX9 321 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 LAS2Q8IYD9 372 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PCDH20Q8N6Y1 951 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 OR10G2Q8NGC3 310 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM125Q96AQ2 219 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 FOXRED1Q96CU9 486 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SH3YL1Q96HL8 342 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 POP1Q99575 1024 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ADAM2Q99965 735 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SMDT1Q9H4I9 107 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PIF1Q9H611 641 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 P2RX2Q9UBL9 471 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF107Q9UII5 783 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ERVK-19Q9WJR5 959 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 MED31Q9Y3C7 131 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 LAMB1P07942 1786 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TBC1D3BA6NDS4 549 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 POLRMTO00411 1230 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TO15178 435 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SSX5O60225 188 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ADAM23O75077 832 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 GNSP15586 552 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 HSD11B1P28845 292 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF157P51786 506 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CRYBB1P53674 252 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 MAZP56270 477 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 C19orf57Q0VDD7 668 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 DGCR6Q14129 220 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TRAM2Q15035 370 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 LRIF1Q5T3J3 769 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ATPAF1Q5TC12 328 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PXDC1Q5TGL8 231 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 OR5J2Q8NH18 312 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms