RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 BTN3A1O00481 513 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SLC28A2O43868 658 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 C1RP00736 705 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 MTHFD1P11586 935 aaKnown RBP6.18□□□□□ -1.42
VPS35-201ENST00000299138 CPN2P22792 545 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 TCEA1P23193 301 aaKnown RBP6.18□□□□□ -1.42
VPS35-201ENST00000299138 AQP1P29972 269 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SLC6A4P31645 630 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 AKT2P31751 481 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 MPIP34949 423 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 OPRL1P41146 370 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SLC11A2P49281 568 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 CLDN8P56748 225 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 KLHL22Q53GT1 634 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 OXLD1Q5BKU9 147 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 CLEC20AQ6ZU45 233 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 OR10T2Q8NGX3 314 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 OR52J3Q8NH60 311 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 TRAPPC12Q8WVT3 735 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 HYLS1Q96M11 299 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ZSWIM3Q96MP5 696 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 GAD1Q99259 594 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 PHOX2BQ99453 314 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 NLE1Q9NVX2 485 aaPredicted RBP6.18□□□□□ -1.42
VPS35-201ENST00000299138 ICKQ9UPZ9 632 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 RUVBL1Q9Y265 456 aaKnown RBP6.18□□□□□ -1.42
VPS35-201ENST00000299138 NOBOXO60393 691 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 CDRT1O95170 752 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 AMHP03971 560 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 PRPH2P23942 346 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 FMO3P31513 532 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ZNF136P52737 540 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 CTBP1Q13363 440 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ARFRP1Q13795 201 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ALG11Q2TAA5 492 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 TANGO2Q6ICL3 276 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 MOB2Q70IA6 237 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 CREB3L2Q70SY1 520 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 LIX1LQ8IVB5 337 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ZDHHC21Q8IVQ6 265 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 MFSD4AQ8N468 514 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 TMEM151AQ8N4L1 468 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 OR7G1Q8NGA0 311 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 C1orf216Q8TAB5 229 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SMARCD2Q92925 531 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 PDCD1LG2Q9BQ51 273 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 MRPL45Q9BRJ2 306 aaKnown RBP6.18□□□□□ -1.42
VPS35-201ENST00000299138 OCEL1Q9H607 264 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 PCDHGB7Q9Y5F8 929 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 H3BSH0 61 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CLDN11O75508 207 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CREG1O75629 220 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 RECQL4O94761 1208 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 LDOC1O95751 146 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 THP07101 528 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 ZDHHC11BP0C7U3 371 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 GAAP10253 952 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 FMO4P31512 558 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 GJA5P36382 358 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 FXYD6P3P58550 94 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 IRF9Q00978 393 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 EXOC3L2Q2M3D2 409 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 C14orf28Q4W4Y0 310 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 RETSATQ6NUM9 610 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 SLC9B2Q86UD5 537 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 TEX26Q8N6G2 289 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 ZNF596Q8TC21 504 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 HAVCR2Q8TDQ0 301 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 UFD1Q92890 307 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CHFRQ96EP1 664 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 HRASLS5Q96KN8 279 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 QRSL1Q9H0R6 528 aaKnown RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 PIGVQ9NUD9 493 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 PGAP2Q9UHJ9 254 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 WASH3PC4AMC7 463 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 GPR182O15218 404 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CCNB2O95067 398 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 IL1AP01583 271 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 NTSP30990 170 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CDK5R2Q13319 367 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 BTN1A1Q13410 526 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 BOP1Q14137 746 aaKnown RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 PAN3Q58A45 887 aaKnown RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 MAP1SQ66K74 1059 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 FAM111BQ6SJ93 734 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 ZNF808Q8N4W9 903 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 ASB13Q8WXK3 278 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 KLRG1Q96E93 195 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 SCRN2Q96FV2 425 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 SENP8Q96LD8 212 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 ZNF275Q9NSD4 429 aaPredicted RBP6.17□□□□□ -1.42
VPS35-201ENST00000299138 SACM1LQ9NTJ5 587 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 UFSP2Q9NUQ7 469 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 METTL15A6NJ78 407 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 RHPN2P1A8MT19 583 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 TNFRSF10AO00220 468 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 FFAR3O14843 346 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 GPR42O15529 346 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CYTIPO60759 359 aa6.17□□□□□ -1.42
VPS35-201ENST00000299138 CRTAPO75718 401 aaPredicted RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms