RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 NEIL2Q969S2 332 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 PDLIM5Q96HC4 596 aaKnown RBP11.46□□□□□ -0.57
USHBP1-201ENST00000252597 TBX5Q99593 518 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 POLR2J3Q9H1A7 115 aaKnown RBP11.46□□□□□ -0.57
USHBP1-201ENST00000252597 BEX1Q9HBH7 125 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 SEMA3GQ9NS98 782 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 ATP6V1HQ9UI12 483 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 POFUT2Q9Y2G5 429 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 KCNE2Q9Y6J6 123 aa11.46□□□□□ -0.57
USHBP1-201ENST00000252597 WASHC1A8K0Z3 465 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 ARHGEF33A8MVX0 844 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 IL12RB1P42701 662 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 CTSCP53634 463 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 WNT3P56703 355 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 SRP54P61011 504 aaKnown RBP11.46□□□□□ -0.58
USHBP1-201ENST00000252597 KRR1Q13601 381 aaKnown RBP11.46□□□□□ -0.58
USHBP1-201ENST00000252597 TBCEQ15813 527 aaPredicted RBP11.46□□□□□ -0.58
USHBP1-201ENST00000252597 WASH2PQ6VEQ5 465 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 TP53I13Q8NBR0 393 aaPredicted RBP11.46□□□□□ -0.58
USHBP1-201ENST00000252597 NLGN4YQ8NFZ3 816 aaPredicted RBP11.46□□□□□ -0.58
USHBP1-201ENST00000252597 OR2AP1Q8NGE2 309 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 C7orf34Q96L11 122 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 FOPNLQ96NB1 174 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 COQ7Q99807 217 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 TMED9Q9BVK6 235 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 KCNK12Q9HB15 430 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 EQTNQ9NQ60 294 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 NLKQ9UBE8 527 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 NAALAD2Q9Y3Q0 740 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 TRPM7Q96QT4 1865 aa11.46□□□□□ -0.58
USHBP1-201ENST00000252597 FAM240BA0A1B0GVZ2 78 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 A0A1W2PRB8 838 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 A0A1W2PRU2 124 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 PRR23AA6NEV1 266 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 H7C4K7 107 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 SCAMP2O15127 329 aaKnown RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 FRS3O43559 492 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 CATP04040 527 aaKnown RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 ADRA2AP08913 450 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 IL7P13232 177 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 GPX2P18283 190 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 BUD31P41223 144 aaPredicted RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 HTR3AP46098 478 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 VEGFBP49765 207 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 MANFP55145 182 aaKnown RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 SNRPD1P62314 119 aaKnown RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 MAP4K2Q12851 820 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 SNAPC1Q16533 368 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 TMEM220Q6QAJ8 160 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 IL17RDQ8NFM7 739 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 ZNF566Q969W8 418 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 HDHD5Q9BXW7 423 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 RACGAP1Q9H0H5 632 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 FAM83DQ9H4H8 585 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 SUV39H2Q9H5I1 410 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 FAM120CQ9NX05 1096 aaKnown RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 MARCH5Q9NX47 278 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 RNF186Q9NXI6 227 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 MKLN1Q9UL63 735 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 HCN4Q9Y3Q4 1203 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 PCDHGB1Q9Y5G3 927 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 HOXC11O43248 304 aaPredicted RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 ARHGEF9O43307 516 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 SLC28A2O43868 658 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 ERAL1O75616 437 aaKnown RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 JUPP14923 745 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 SDC2P34741 201 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 HTR2BP41595 481 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 RORCP51449 518 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 QPRTQ15274 297 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 MICAQ29983 383 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 SDE2Q6IQ49 451 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 TRIM40Q6P9F5 258 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 BRAT1Q6PJG6 821 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 LYPD8Q6UX82 237 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 RRM2BQ7LG56 351 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 LRRC70Q7Z2Q7 622 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 RNF180Q86T96 592 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 WACQ9BTA9 647 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 CAPN10Q9HC96 672 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 TMEM39AQ9NV64 488 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 HSPB11Q9Y547 144 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 YIPF1Q9Y548 306 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 SRCP12931 536 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 APEX1P27695 318 aaKnown RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 MAGEA2P43356 314 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 PFN3P60673 137 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 PTSQ03393 145 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 SCN1BQ07699 218 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 SMU1Q2TAY7 513 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 WDR53Q7Z5U6 358 aaPredicted RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 ATP6V1C2Q8NEY4 427 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 TRMT61AQ96FX7 289 aaKnown RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 CEP295NLQ96MC4 621 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 MACROD1Q9BQ69 325 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 TTTY10Q9BZA0 68 aa11.45□□□□□ -0.58
USHBP1-201ENST00000252597 MOV10Q9HCE1 1003 aaKnown RBP11.45□□□□□ -0.58
USHBP1-201ENST00000252597 GREB1Q4ZG55 1949 aa11.44□□□□□ -0.58
USHBP1-201ENST00000252597 M0R3H8 397 aa11.44□□□□□ -0.58
USHBP1-201ENST00000252597 PLK4O00444 970 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms