RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 PRR35P0CG20 571 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 ITGAMP11215 1152 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 CPA3P15088 417 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 HIST1H1TP22492 207 aaPredicted RBP11.91□□□□□ -0.5
LSM5-201ENST00000223084 PTX3P26022 381 aaPredicted RBP11.91□□□□□ -0.5
LSM5-201ENST00000223084 CD97P48960 835 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 ACTN3Q08043 901 aaPredicted RBP11.91□□□□□ -0.5
LSM5-201ENST00000223084 KLRB1Q12918 225 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 IFT88Q13099 833 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 SLAMF1Q13291 335 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 KRT71Q3SY84 523 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 GGTA1PQ4G0N0 100 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 NADK2Q4G0N4 442 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 TCHHL1Q5QJ38 904 aaPredicted RBP11.91□□□□□ -0.5
LSM5-201ENST00000223084 QSOX2Q6ZRP7 698 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 GPRIN3Q6ZVF9 776 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 PRICKLE2Q7Z3G6 844 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 CLNKQ7Z7G1 428 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 KBTBD2Q8IY47 623 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 SIRT6Q8N6T7 355 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 CDYL2Q8N8U2 506 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 ARMC2Q8NEN0 867 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 BRIX1Q8TDN6 353 aaKnown RBP11.91□□□□□ -0.5
LSM5-201ENST00000223084 APOPT1Q96IL0 206 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 IMMP1LQ96LU5 166 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 MAGEB10Q96LZ2 347 aaPredicted RBP11.91□□□□□ -0.5
LSM5-201ENST00000223084 TMEM109Q9BVC6 243 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 ZNF717Q9BY31 904 aaPredicted RBP11.91□□□□□ -0.5
LSM5-201ENST00000223084 ROGDIQ9GZN7 287 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 GSTO2Q9H4Y5 243 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 PRDM9Q9NQV7 894 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 PRTFDC1Q9NRG1 225 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 SLC17A7Q9P2U7 560 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 C19orf25Q9UFG5 118 aaPredicted RBP11.91□□□□□ -0.5
LSM5-201ENST00000223084 FBXW2Q9UKT8 454 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 PLLPQ9Y342 182 aa11.91□□□□□ -0.5
LSM5-201ENST00000223084 IGKV3D-11A0A0A0MRZ8 115 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 SUV39H1O43463 412 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 SLC28A2O43868 658 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 SCELO95171 688 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 PDYNP01213 254 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 SERPINA7P05543 415 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 BSGP35613 385 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 NAGLUP54802 743 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 BTBD16Q32M84 506 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 IRAK1BP1Q5VVH5 260 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 PAPD4Q6PIY7 484 aaKnown RBP11.9□□□□□ -0.5
LSM5-201ENST00000223084 ZNF605Q86T29 641 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 C10orf107Q8IVU9 208 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 SCUBE1Q8IWY4 988 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 IQCKQ8N0W5 287 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 RBMXL3Q8N7X1 1067 aaKnown RBP11.9□□□□□ -0.5
LSM5-201ENST00000223084 TEX19Q8NA77 164 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 SELENOMQ8WWX9 145 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 PSMF1Q92530 271 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 CCDC126Q96EE4 140 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 ZIM3Q96PE6 472 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 FAM111AQ96PZ2 611 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 ZNF382Q96SR6 550 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 HBEGFQ99075 208 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 SERPINI1Q99574 410 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 CENPKQ9BS16 269 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 TUBB6Q9BUF5 446 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 ELOVL6Q9H5J4 265 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 LYRM4Q9HD34 91 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 MKS1Q9NXB0 559 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 LUZP4Q9P127 313 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 PTGFRNQ9P2B2 879 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 TRPS1Q9UHF7 1281 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 SNX6Q9UNH7 406 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 MMACHCQ9Y4U1 282 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 PCDHGB7Q9Y5F8 929 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 CLDN16Q9Y5I7 305 aa11.9□□□□□ -0.5
LSM5-201ENST00000223084 NBASA2RRP1 2371 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 TCRBV16S1A1N1A0A5B0 115 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 PYCARD-AS1I3L0S3 204 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 MANBAO00462 879 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 UBFD1O14562 309 aaKnown RBP11.89□□□□□ -0.51
LSM5-201ENST00000223084 TMPRSS11DO60235 418 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 PRKRAO75569 313 aaKnown RBP11.89□□□□□ -0.51
LSM5-201ENST00000223084 MLYCDO95822 493 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 GBAP04062 536 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 ALPPP05187 535 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 CHN1P15882 459 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 CPN2P22792 545 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 PPP2R1BP30154 601 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 HTR6P50406 440 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 HNRNPH2P55795 449 aaKnown RBP11.89□□□□□ -0.51
LSM5-201ENST00000223084 DNAJB13P59910 316 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 ID2Q02363 134 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 LCP2Q13094 533 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 SLC13A2Q13183 592 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 CUL3Q13618 768 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 PCLAFQ15004 111 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 CEP85LQ5SZL2 805 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 AGAP7PQ5VUJ5 663 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 B3GNTL1Q67FW5 361 aaPredicted RBP11.89□□□□□ -0.51
LSM5-201ENST00000223084 SCIMPQ6UWF3 145 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 LINC00696Q6ZRV3 163 aa11.89□□□□□ -0.51
LSM5-201ENST00000223084 EFCAB3Q8N7B9 438 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms