RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SVOPLQ8N434 492 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 FAM83CQ9BQN1 747 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CHTOPQ9Y3Y2 248 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SYNGAP1Q96PV0 1343 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PRORSD1PA6NEY8 169 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 AGAP14A8MT82 685 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MAP2K7O14733 419 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SHOX2O60902 331 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CDK9P50750 372 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 NUDT6P53370 316 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 HMGCS2P54868 508 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 BNIP2Q12982 314 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 RIPPLY2Q5TAB7 128 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 BSPRYQ5W0U4 402 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 C17orf107Q6ZR85 190 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 KMT5CQ86Y97 462 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SIRT6Q8N6T7 355 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CXorf40AQ8TE69 158 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CAVIN3Q969G5 261 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF775Q96BV0 537 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SAMD8Q96LT4 415 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 Q96MT0 163 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PPIL3Q9H2H8 161 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 LDAHQ9H6V9 325 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TCF7L1Q9HCS4 588 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ABCC13Q9NSE7 274 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 DECR2Q9NUI1 292 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 NARFQ9UHQ1 456 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PAPSS1O43252 624 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 RASAL1O95294 804 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 RPS5P46782 204 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 RFX3P48380 749 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 RPIAP49247 311 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 RBP2P50120 134 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PRKXP51817 358 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 GBX1Q14549 363 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MFSD6LQ8IWD5 586 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 OR2AP1Q8NGE2 309 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TFAP2BQ92481 460 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 FAM131CQ96AQ9 280 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SORCS2Q96PQ0 1159 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CNTD2Q9H8S5 307 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 VWA7Q9Y334 891 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PVALEFA0A1B0GWK0 134 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 H0Y980 276 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 H7BY64 318 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ADAMDEC1O15204 470 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MID1O15344 667 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 UGT2B17O75795 530 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ACTL6BO94805 426 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ZFPL1O95159 310 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ABHD16AO95870 558 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ITGAVP06756 1048 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM253P0C7T8 217 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MC4RP32245 332 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ACTBP60709 375 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ACTG1P63261 375 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CRADDP78560 199 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 GRB7Q14451 532 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TATDN3Q17R31 274 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ZSWIM7Q19AV6 140 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SPIN3Q5JUX0 258 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PDSS1Q5T2R2 415 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PRAMEF18Q5VWM3 479 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 NKAIN4Q8IVV8 208 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 HS3ST5Q8IZT8 346 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 HDDC3Q8N4P3 179 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 OR5T2Q8NGG2 359 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PKP2Q99959 881 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SLC35A5Q9BS91 424 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MYL10Q9BUA6 226 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PITPNM3Q9BZ71 974 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ANGPT4Q9Y264 503 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 NDUFAF1Q9Y375 327 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 KIF13AQ9H1H9 1805 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 A0A087WZY1 265 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TNFSF12O43508 249 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 HBQ1P09105 142 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 GAAP10253 952 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PTPN2P17706 415 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 KLRK1P26718 216 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CCR7P32248 378 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 GRK5P34947 590 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ASCL1P50553 236 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 RAC3P60763 192 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CLCQ05315 142 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ANKRD22Q5VYY1 191 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 BRICD5Q6PL45 260 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 UNC5AQ6ZN44 842 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF438Q7Z4V0 828 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 OR6K6Q8NGW6 343 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 OR13G1Q8NGZ3 307 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CXorf40BQ96DE9 158 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MXRA8Q9BRK3 442 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ROPN1BQ9BZX4 212 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 IKZF4Q9H2S9 585 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 A0A087WXM4 84 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CTDSPLO15194 276 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SULT1C4O75897 302 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 FBP1P09467 338 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms