RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ADAM30Q9UKF2 790 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 FZD4Q9ULV1 537 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TESMINQ9Y4I5 508 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 LYVE1Q9Y5Y7 322 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 NOTCH4Q99466 2003 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TRBV5-3A0A0A0MS03 114 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TRBV5-4A0A0C4DH59 114 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 OR2A25A4D2G3 310 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 A8MVJ9 347 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 FADS2P1A8MWK0 482 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TAPBPO15533 448 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TBX1O43435 398 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 DYRK3O43781 588 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 KCNJ13O60928 360 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF254O75437 659 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 IFNW1P05000 195 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF30P17039 623 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 AMD1P17707 334 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 GPX2P18283 190 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 PCMT1P22061 227 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SOAT1P35610 550 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 GDF5P43026 501 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 HSD17B7P56937 341 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 STARD6P59095 220 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 AQP6Q13520 282 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 PTCHD3Q3KNS1 767 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 GTDC1Q4AE62 458 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 COLEC12Q5KU26 742 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 STPG1Q5TH74 334 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 LURAP1LQ8IV03 231 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 LGI4Q8N135 537 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SPEM1Q8N4L4 309 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ZBTB44Q8NCP5 570 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF675Q8TD23 568 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CHTF18Q8WVB6 975 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 PPCDCQ96CD2 204 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 MSLNLQ96KJ4 702 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 HRASLS5Q96KN8 279 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 VPS35Q96QK1 796 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 NLNQ9BYT8 704 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 BHLHE41Q9C0J9 482 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SGK2Q9HBY8 427 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CCDC177Q9NQR7 707 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 EXD2Q9NVH0 621 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SLC25A37Q9NYZ2 338 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TMEFF2Q9UIK5 374 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SLC13A4Q9UKG4 626 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CORINQ9Y5Q5 1042 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 F8W810 466 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MYL12BO14950 172 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SCAMP2O15127 329 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 ZW10O43264 779 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MITFO75030 526 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 GJB3O75712 270 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CCNKO75909 580 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 POP4O95707 220 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 URODP06132 367 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CDK1P06493 297 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 ALPIP09923 528 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CKBP12277 381 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 BPIP17213 487 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PFKLP17858 780 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 ITPKAP23677 461 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MZF1P28698 734 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 OR1D2P34982 312 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 EIF2DP41214 584 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CLK3P49761 638 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 DAPP51397 102 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 UGT2B15P54855 530 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 NCS1P62166 190 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MTAPQ13126 283 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 TOMM20Q15388 145 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 C18orf21Q32NC0 220 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 ADPRMQ3LIE5 342 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 IQCCQ4KMZ1 466 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PYCR3Q53H96 274 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MLIPQ5VWP3 458 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MEDAGQ5VYS4 303 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 TMEM236Q5W0B7 351 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MED27Q6P2C8 311 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 FAHD1Q6P587 224 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SUSD1Q6UWL2 747 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PTCHD4Q6ZW05 846 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 NANOGNBQ7Z5D8 188 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 RBM23Q86U06 439 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 RAB43Q86YS6 212 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 HS3ST5Q8IZT8 346 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SIX5Q8N196 739 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 LINC00471Q8N535 108 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 FAM86B1Q8N7N1 296 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 OR2AP1Q8NGE2 309 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PIH1D2Q8WWB5 315 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 HTRA1Q92743 480 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 TRMT2BQ96GJ1 504 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 HEPHQ9BQS7 1158 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 EFCAB11Q9BUY7 163 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 BBS2Q9BXC9 721 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 B3GNT4Q9C0J1 378 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 OR2B2Q9GZK3 357 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms