RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CER1O95813 267 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 FAM58BPP0C7Q3 252 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 ALPPL2P10696 532 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 PTPN6P29350 595 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 GPR3P46089 330 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 MTPNP58546 118 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 MS4A2Q01362 244 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 SRSF11Q05519 484 aaKnown RBP19.09■□□□□ 0.65
CLN3-250ENST00000636839 NR1D2Q14995 579 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 NR0B2Q15466 257 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 ARHGAP24Q8N264 748 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 TMEM125Q96AQ2 219 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 ZDHHC12Q96GR4 267 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 HOPXQ9BPY8 73 aaPredicted RBP19.09■□□□□ 0.65
CLN3-250ENST00000636839 PIF1Q9H611 641 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 EPHA6Q9UF33 1036 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 ATP6V1HQ9UI12 483 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 ADAM29Q9UKF5 820 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 FBXW2Q9UKT8 454 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 ASB4Q9Y574 426 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 PCDHB14Q9Y5E9 798 aa19.09■□□□□ 0.65
CLN3-250ENST00000636839 CACNA1HO95180 2353 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 TLCD2A6NGC4 264 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 ZNF860A6NHJ4 632 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 KCNH1O95259 989 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 SYPP08247 313 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 SMIM10L1P0DMW3 83 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 OLR1P78380 273 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 PDE7AQ13946 482 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 WASHC2DQ5SRD0 308 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 CLEC4FQ8N1N0 589 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 THAP11Q96EK4 314 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 SMIM10Q96HG1 83 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 QRFPRQ96P65 431 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 CGREF1Q99674 301 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 CCDC3Q9BQI4 270 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 TBCDQ9BTW9 1192 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 PCDHAC1Q9H158 963 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 SOHLH2Q9NX45 425 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 POMPQ9Y244 141 aa19.08■□□□□ 0.65
CLN3-250ENST00000636839 ZNF318Q5VUA4 2279 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 A0A1W2PR48 441 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 MED26O95402 600 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 CPSF4O95639 269 aaKnown RBP19.08■□□□□ 0.64
CLN3-250ENST00000636839 GABRA4P48169 554 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 KLC1Q07866 573 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 C18orf63Q68DL7 685 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 PDSS2Q86YH6 399 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 CAMKVQ8NCB2 501 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 GAL3ST3Q96A11 431 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 PPCDCQ96CD2 204 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 TCTN2Q96GX1 697 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 MAPKAP1Q9BPZ7 522 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 RAB33BQ9H082 229 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 CD300AQ9UGN4 299 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 PRDM4Q9UKN5 801 aa19.08■□□□□ 0.64
CLN3-250ENST00000636839 KHNYNO15037 678 aaKnown RBP19.07■□□□□ 0.64
CLN3-250ENST00000636839 DUX1O43812 170 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 IL1RNP18510 177 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 SLC9A5Q14940 896 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 NDUFAF5Q5TEU4 345 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 C1orf146Q5VVC0 180 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 MRM1Q6IN84 353 aaKnown RBP19.07■□□□□ 0.64
CLN3-250ENST00000636839 CAMKMTQ7Z624 323 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 HIPK4Q8NE63 616 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 A0A1W2PQM1 296 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 LNP1A1A4G5 178 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 PGRMC2O15173 223 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 YKT6O15498 198 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 DDCP20711 480 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 CCL7P80098 99 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 RUNX2Q13950 521 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 DPY19L1Q2PZI1 675 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 PLA2G2CQ5R387 149 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 TMEM214Q6NUQ4 689 aaKnown RBP19.07■□□□□ 0.64
CLN3-250ENST00000636839 ZNF574Q6ZN55 896 aaPredicted RBP19.07■□□□□ 0.64
CLN3-250ENST00000636839 C10orf111Q8N326 155 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 FAM181AQ8N9Y4 354 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 ITCHQ96J02 903 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 KCNH6Q9H252 994 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 SLAMF7Q9NQ25 335 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 MIEF1Q9NQG6 463 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 RXFP3Q9NSD7 469 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 ABCD2Q9UBJ2 740 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 MAN2B2Q9Y2E5 1009 aa19.07■□□□□ 0.64
CLN3-250ENST00000636839 TRBV5-3A0A0A0MS03 114 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 EME2A4GXA9 379 aaPredicted RBP19.06■□□□□ 0.64
CLN3-250ENST00000636839 RFXANKO14593 260 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 MGRN1O60291 552 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 PCDHGA12O60330 932 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 DNAJA2O60884 412 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 ABCB1P08183 1280 aaPredicted RBP19.06■□□□□ 0.64
CLN3-250ENST00000636839 HOXB9P17482 250 aaPredicted RBP19.06■□□□□ 0.64
CLN3-250ENST00000636839 MLLT3P42568 568 aaPredicted RBP19.06■□□□□ 0.64
CLN3-250ENST00000636839 GPLD1P80108 840 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 SF3A2Q15428 464 aaKnown RBP19.06■□□□□ 0.64
CLN3-250ENST00000636839 IKBIPQ70UQ0 350 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 IFNEQ86WN2 208 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 OR5T3Q8NGG3 340 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 KLHL6Q8WZ60 621 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms