RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 MMACHCQ9Y4U1 282 aa15.05■□□□□ -0
CLN3-246ENST00000636228 OARD1Q9Y530 152 aa15.05■□□□□ -0
CLN3-246ENST00000636228 PINLYPA6NC86 204 aa15.04■□□□□ -0
CLN3-246ENST00000636228 LRIT2A6NDA9 550 aa15.04■□□□□ -0
CLN3-246ENST00000636228 TMEM200CA6NKL6 621 aa15.04■□□□□ -0
CLN3-246ENST00000636228 G3V3Y1 287 aa15.04■□□□□ -0
CLN3-246ENST00000636228 CES2O00748 559 aa15.04■□□□□ -0
CLN3-246ENST00000636228 CDK2AP1O14519 115 aa15.04■□□□□ -0
CLN3-246ENST00000636228 TBX6O95947 436 aaPredicted RBP15.04■□□□□ -0
CLN3-246ENST00000636228 GNAZP19086 355 aa15.04■□□□□ -0
CLN3-246ENST00000636228 SSTR2P30874 369 aa15.04■□□□□ -0
CLN3-246ENST00000636228 SLC6A12P48065 614 aa15.04■□□□□ -0
CLN3-246ENST00000636228 GPR143P51810 404 aa15.04■□□□□ -0
CLN3-246ENST00000636228 STXBP1P61764 594 aaKnown RBP15.04■□□□□ -0
CLN3-246ENST00000636228 CDKL1Q00532 357 aa15.04■□□□□ -0
CLN3-246ENST00000636228 TLE4Q04727 773 aa15.04■□□□□ -0
CLN3-246ENST00000636228 PDIA2Q13087 525 aaKnown RBP15.04■□□□□ -0
CLN3-246ENST00000636228 SLC13A2Q13183 592 aa15.04■□□□□ -0
CLN3-246ENST00000636228 TMIGD1Q6UXZ0 262 aa15.04■□□□□ -0
CLN3-246ENST00000636228 MEX3BQ6ZN04 569 aaKnown RBP15.04■□□□□ -0
CLN3-246ENST00000636228 CAPN12Q6ZSI9 719 aa15.04■□□□□ -0
CLN3-246ENST00000636228 FRA10AC1Q70Z53 315 aa15.04■□□□□ -0
CLN3-246ENST00000636228 VN1R5Q7Z5H4 357 aa15.04■□□□□ -0
CLN3-246ENST00000636228 POGLUT1Q8NBL1 392 aa15.04■□□□□ -0
CLN3-246ENST00000636228 FBXO36Q8NEA4 188 aa15.04■□□□□ -0
CLN3-246ENST00000636228 C16orf52Q8NHV5 167 aa15.04■□□□□ -0
CLN3-246ENST00000636228 GAL3ST3Q96A11 431 aa15.04■□□□□ -0
CLN3-246ENST00000636228 ESAMQ96AP7 390 aa15.04■□□□□ -0
CLN3-246ENST00000636228 QRFPRQ96P65 431 aa15.04■□□□□ -0
CLN3-246ENST00000636228 CSF3RQ99062 836 aa15.04■□□□□ -0
CLN3-246ENST00000636228 SPOCK3Q9BQ16 436 aa15.04■□□□□ -0
CLN3-246ENST00000636228 DEPPQ9NTK1 212 aa15.04■□□□□ -0
CLN3-246ENST00000636228 TAPBPO15533 448 aa15.03■□□□□ -0
CLN3-246ENST00000636228 PRAMEF4O60810 478 aa15.03■□□□□ -0
CLN3-246ENST00000636228 OR2J2O76002 312 aa15.03■□□□□ -0
CLN3-246ENST00000636228 IFNA16P05015 189 aa15.03■□□□□ -0
CLN3-246ENST00000636228 HNMTP50135 292 aa15.03■□□□□ -0
CLN3-246ENST00000636228 SSR4P51571 173 aa15.03■□□□□ -0
CLN3-246ENST00000636228 ARL4CP56559 192 aa15.03■□□□□ -0
CLN3-246ENST00000636228 RAB38P57729 211 aa15.03■□□□□ -0
CLN3-246ENST00000636228 DR1Q01658 176 aa15.03■□□□□ -0
CLN3-246ENST00000636228 BMPR2Q13873 1038 aa15.03■□□□□ -0
CLN3-246ENST00000636228 PRAMEF9Q5VWM5 478 aa15.03■□□□□ -0
CLN3-246ENST00000636228 IL20RBQ6UXL0 311 aa15.03■□□□□ -0
CLN3-246ENST00000636228 ZNF321PQ8N8H1 164 aa15.03■□□□□ -0
CLN3-246ENST00000636228 LRRC39Q96DD0 335 aa15.03■□□□□ -0
CLN3-246ENST00000636228 VMP1Q96GC9 406 aa15.03■□□□□ -0
CLN3-246ENST00000636228 CCDC77Q9BR77 488 aa15.03■□□□□ -0
CLN3-246ENST00000636228 UCK2Q9BZX2 261 aa15.03■□□□□ -0
CLN3-246ENST00000636228 CAB39LQ9H9S4 337 aa15.03■□□□□ -0
CLN3-246ENST00000636228 SMYD2Q9NRG4 433 aa15.03■□□□□ -0
CLN3-246ENST00000636228 COQ3Q9NZJ6 369 aa15.03■□□□□ -0
CLN3-246ENST00000636228 ZNF490Q9ULM2 529 aaPredicted RBP15.03■□□□□ -0
CLN3-246ENST00000636228 ERVK-11Q9UQG0 969 aa15.03■□□□□ -0
CLN3-246ENST00000636228 MTO1Q9Y2Z2 717 aaKnown RBP15.03■□□□□ -0
CLN3-246ENST00000636228 DCHS2Q6V1P9 2916 aa15.02■□□□□ -0
CLN3-246ENST00000636228 NKX2-6A6NCS4 301 aa15.02■□□□□ -0
CLN3-246ENST00000636228 FAM166BA8MTA8 275 aa15.02■□□□□ -0
CLN3-246ENST00000636228 WWP2O00308 870 aa15.02■□□□□ -0
CLN3-246ENST00000636228 CLDN4O14493 209 aa15.02■□□□□ -0
CLN3-246ENST00000636228 TP73O15350 636 aa15.02■□□□□ -0
CLN3-246ENST00000636228 B3GALT2O43825 422 aa15.02■□□□□ -0
CLN3-246ENST00000636228 ZFAND5O76080 213 aa15.02■□□□□ -0
CLN3-246ENST00000636228 OR6B1O95007 311 aa15.02■□□□□ -0
CLN3-246ENST00000636228 CERS1P27544 350 aa15.02■□□□□ -0
CLN3-246ENST00000636228 HSD17B7P56937 341 aa15.02■□□□□ -0
CLN3-246ENST00000636228 MRPS25P82663 173 aaKnown RBP15.02■□□□□ -0
CLN3-246ENST00000636228 ZFP62Q8NB50 900 aaPredicted RBP15.02■□□□□ -0
CLN3-246ENST00000636228 CHTF18Q8WVB6 975 aa15.02■□□□□ -0
CLN3-246ENST00000636228 ANKRD7Q92527 254 aa15.02■□□□□ -0
CLN3-246ENST00000636228 F2RL3Q96RI0 385 aa15.02■□□□□ -0
CLN3-246ENST00000636228 TMEM79Q9BSE2 394 aa15.02■□□□□ -0
CLN3-246ENST00000636228 NPLQ9BXD5 320 aaPredicted RBP15.02■□□□□ -0
CLN3-246ENST00000636228 ENKD1Q9H0I2 346 aa15.02■□□□□ -0
CLN3-246ENST00000636228 TIMMDC1Q9NPL8 285 aa15.02■□□□□ -0
CLN3-246ENST00000636228 MOCS1Q9NZB8 636 aa15.02■□□□□ -0
CLN3-246ENST00000636228 PPIEQ9UNP9 301 aaKnown RBP15.02■□□□□ -0
CLN3-246ENST00000636228 YARS2Q9Y2Z4 477 aaKnown RBP15.02■□□□□ -0
CLN3-246ENST00000636228 NCOA6Q14686 2063 aaPredicted RBP15.01□□□□□ -0.01
CLN3-246ENST00000636228 A0A0G2JMM0 328 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 A0A1W2PPB8 328 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 A0A1W2PRS3 328 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 ANKDD1BA6NHY2 528 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 FAM90A27PA6NNH2 459 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 A8MVJ9 347 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 KIR3DP1A8MWS1 328 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 CYR61O00622 381 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 SEC31AO94979 1220 aaKnown RBP15.01□□□□□ -0.01
CLN3-246ENST00000636228 TCP1P17987 556 aaKnown RBP15.01□□□□□ -0.01
CLN3-246ENST00000636228 GMPRP36959 345 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 HSPA7P48741 367 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 LIM2P55344 173 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 PLGLB1Q02325 96 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 FRG1Q14331 258 aaKnown RBP15.01□□□□□ -0.01
CLN3-246ENST00000636228 TERF2Q15554 542 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 TGFBIQ15582 683 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 ZNF750Q32MQ0 723 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 EMC4Q5J8M3 183 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 ADAMTSL2Q86TH1 951 aa15.01□□□□□ -0.01
CLN3-246ENST00000636228 CREG2Q8IUH2 290 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms