RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 TMEM80Q96HE8 168 aa13.52□□□□□ -0.24
LDB3-209ENST00000623056 PIP5K1AQ99755 562 aa13.52□□□□□ -0.24
LDB3-209ENST00000623056 MND1Q9BWT6 205 aa13.52□□□□□ -0.24
LDB3-209ENST00000623056 POLR2J2Q9GZM3 115 aaKnown RBP13.52□□□□□ -0.24
LDB3-209ENST00000623056 CRLS1Q9UJA2 301 aa13.52□□□□□ -0.24
LDB3-209ENST00000623056 TRBV5-4A0A0C4DH59 114 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 SERTM1A2A2V5 107 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 GABRR3A8MPY1 467 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 LEUTXA8MZ59 168 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 SMLR1H3BR10 107 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 CLDN11O75508 207 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 AP2A2O94973 939 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 GASTP01350 101 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 MSL3P1P0C860 447 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 ETFAP13804 333 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 ITPKAP23677 461 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 XCR1P46094 333 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 MAP2K3P46734 347 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 SLC6A12P48065 614 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 ARPP19P56211 112 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 CDONQ4KMG0 1287 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 CDKL4Q5MAI5 379 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 CPTPQ5TA50 214 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 IDO2Q6ZQW0 420 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 UBE2R2Q712K3 238 aaPredicted RBP13.52□□□□□ -0.25
LDB3-209ENST00000623056 TMC8Q8IU68 726 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 NPAS3Q8IXF0 933 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 PHC2Q8IXK0 858 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 IQCF2Q8IXL9 164 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 GTPBP2Q9BX10 602 aaKnown RBP13.52□□□□□ -0.25
LDB3-209ENST00000623056 RACGAP1Q9H0H5 632 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 NARFLQ9H6Q4 476 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 TXNL4BQ9NX01 149 aaKnown RBP13.52□□□□□ -0.25
LDB3-209ENST00000623056 KCTD5Q9NXV2 234 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 MAT2BQ9NZL9 334 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 DNAJC27Q9NZQ0 273 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 SLC22A14Q9Y267 594 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 HSPB11Q9Y547 144 aa13.52□□□□□ -0.25
LDB3-209ENST00000623056 GADD45GO95257 159 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 IL1AP01583 271 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 ZNF865P0CJ78 1059 aaPredicted RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 PSKH1P11801 424 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 ZNF30P17039 623 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 AP2S1P53680 142 aaPredicted RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 C21orf58P58505 322 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 CHIT1Q13231 466 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 MORN1Q5T089 497 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 ATXN7L2Q5T6C5 722 aaPredicted RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 DDI2Q5TDH0 399 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 MEDAGQ5VYS4 303 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 RNF219Q5W0B1 726 aaPredicted RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 ZNF852Q6ZMS4 543 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 ZNF598Q86UK7 904 aaKnown RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 CLDN22Q8N7P3 220 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 OR9Q1Q8NGQ5 310 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 KIAA1143Q96AT1 154 aaPredicted RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 HTATIP2Q9BUP3 242 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 HDHD5Q9BXW7 423 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 NMNAT1Q9HAN9 279 aaPredicted RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 GPATCH2Q9NW75 528 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 ING3Q9NXR8 418 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 VPS29Q9UBQ0 182 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 LHX3Q9UBR4 397 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 PADI3Q9ULW8 664 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 SNX11Q9Y5W9 270 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 A0A0U1RQF3 1178 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 TLR4O00206 839 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 JUPP14923 745 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 FEN1P39748 380 aaKnown RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 HMGA2P52926 109 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 MVDP53602 400 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 PURAQ00577 322 aaKnown RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 MLLT11Q13015 90 aaPredicted RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 MAP2K5Q13163 448 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 ZNF177Q13360 481 aaPredicted RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 DDX39BQ13838 428 aaKnown RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 NCF4Q15080 339 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 CHRNA6Q15825 494 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 PAQR6Q6TCH4 344 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 C16orf59Q7L2K0 433 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 AMIGO1Q86WK6 493 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 NANOGP1Q8N7R0 232 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 ATP6V1C2Q8NEY4 427 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 OR4A15Q8NGL6 344 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 NFKBIDQ8NI38 313 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 FAM193BQ96PV7 902 aaPredicted RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 ZIC5Q96T25 663 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 AP5M1Q9H0R1 490 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 ZFYVE1Q9HBF4 777 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 RHCGQ9UBD6 479 aa13.51□□□□□ -0.25
LDB3-209ENST00000623056 RUVBL1Q9Y265 456 aaKnown RBP13.51□□□□□ -0.25
LDB3-209ENST00000623056 TRAV19A0A0A6YYK7 116 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 SMIM30A4D0T7 59 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 FAM227AF5H4B4 570 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 CBSLP0DN79 551 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 CBSP35520 551 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 MAN2A2P49641 1150 aa13.5□□□□□ -0.25
LDB3-209ENST00000623056 SNRPGP62308 76 aaKnown RBP13.5□□□□□ -0.25
LDB3-209ENST00000623056 ACSM2AQ08AH3 577 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms