RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 BHLHE41Q9C0J9 482 aaPredicted RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 SLC28A3Q9HAS3 691 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 TRPV4Q9HBA0 871 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 PRDM8Q9NQV8 689 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 KIF17Q9P2E2 1029 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 ZNF282Q9UDV7 671 aaPredicted RBP10.15□□□□□ -0.78
CUX1-221ENST00000622516 RABL2BQ9UNT1 228 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 ORC6Q9Y5N6 252 aa10.15□□□□□ -0.78
CUX1-221ENST00000622516 A0A1W2PPV9 198 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 H0Y8X5 98 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 ZBTB11O95625 1053 aaPredicted RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 POU2F1P14859 743 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 CLK3P49761 638 aaKnown RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 ARHGDIAP52565 204 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 C21orf58P58505 322 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 HSPB3Q12988 150 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 ERICH5Q6P6B1 374 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 LCTLQ6UWM7 567 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 TSEN54Q7Z6J9 526 aaKnown RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 HMGN2P46Q86SG4 172 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 LSRQ86X29 649 aaPredicted RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 KRT78Q8N1N4 520 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 C11orf65Q8NCR3 313 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 STARD8Q92502 1023 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 EXOSC8Q96B26 276 aaKnown RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 TRIT1Q9H3H1 467 aaKnown RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 EHD1Q9H4M9 534 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 CXorf36Q9H7Y0 433 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 REEP1Q9H902 201 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 TM9SF3Q9HD45 589 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 TUBA8Q9NY65 449 aaPredicted RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 USE1Q9NZ43 259 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 RHCGQ9UBD6 479 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 ATP6V1HQ9UI12 483 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 A0A1W2PPW3 197 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 PRAMEF25A6NGN4 478 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 TRIM64CA6NLI5 447 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 GPR37L1O60883 481 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 ALPPL2P10696 532 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 SCARB2Q14108 478 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 RPS26P11Q5JNZ5 115 aaPredicted RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 FGD3Q5JSP0 725 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 ATAT1Q5SQI0 421 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 KHDRBS2Q5VWX1 349 aaKnown RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 XAF1Q6GPH4 301 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 OLIG3Q7RTU3 272 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 CAMKMTQ7Z624 323 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 PIK3C3Q8NEB9 887 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 SETD7Q8WTS6 366 aaKnown RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 RAB8BQ92930 207 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 TAMM41Q96BW9 452 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 C7orf34Q96L11 122 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 DHRS1Q96LJ7 313 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 TEX101Q9BY14 249 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 ZNF717Q9BY31 904 aaPredicted RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 LHPPQ9H008 270 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 ATAD3AQ9NVI7 634 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 RLIMQ9NVW2 624 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 TEX10Q9NXF1 929 aaPredicted RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 TAS2R9Q9NYW1 312 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 IGKV1-8A0A0C4DH67 115 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 KMOO15229 486 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 TMPRSS11DO60235 418 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 SEMG1P04279 462 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 CD247P20963 164 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 DNAJA1P31689 397 aaKnown RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 PIK3CBP42338 1070 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 KIR2DL1P43626 348 aaPredicted RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 RAD23AP54725 363 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 TFF2Q03403 129 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 VEZF1Q14119 521 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 GANABQ14697 944 aaKnown RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 MYBPC3Q14896 1274 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 IQCCQ4KMZ1 466 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 TMEM196Q5HYL7 178 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 DEPDC1Q5TB30 811 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 GPR153Q6NV75 609 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 ANKRD54Q6NXT1 300 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 ZNF773Q6PK81 442 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 TP53I13Q8NBR0 393 aaPredicted RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 ADAMTS16Q8TE57 1224 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 METTL2AQ96IZ6 378 aaKnown RBP10.14□□□□□ -0.79
CUX1-221ENST00000622516 MAGED4Q96JG8 741 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 C17orf62Q9BQA9 187 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 SLC17A9Q9BYT1 436 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 KLHL31Q9H511 634 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 ADPRHL2Q9NX46 363 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 RAB23Q9ULC3 237 aa10.14□□□□□ -0.79
CUX1-221ENST00000622516 POM121BA6NF01 834 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 H3BMQ9 156 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 SH3BP5O60239 455 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 ATP6V1G1O75348 118 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 TNFRSF21O75509 655 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 CEACAM5P06731 702 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 IL1RNP18510 177 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 COL9A1P20849 921 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 C5AR1P21730 350 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 CCR8P51685 355 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 MANFP55145 182 aaKnown RBP10.13□□□□□ -0.79
CUX1-221ENST00000622516 PPP2CBP62714 309 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms