RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CLDN8P56748 225 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 FOLH1Q04609 750 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 GBX1Q14549 363 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 MPEG1Q2M385 716 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 C6orf132Q5T0Z8 1188 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 Q6ZPB1 254 aaPredicted RBP10.03□□□□□ -0.8
VPS11-208ENST00000621676 NLGN4XQ8N0W4 816 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 OR9A4Q8NGU2 314 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 PRPF18Q99633 342 aaKnown RBP10.03□□□□□ -0.8
VPS11-208ENST00000621676 MAPKAP1Q9BPZ7 522 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 GIN1Q9NXP7 522 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 ACSL5Q9ULC5 683 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 MITFO75030 526 aaPredicted RBP10.03□□□□□ -0.8
VPS11-208ENST00000621676 RPN2P04844 631 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 BCHEP06276 602 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 ETS2P15036 469 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 ACADVLP49748 655 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 DUSP2Q05923 314 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 SP140Q13342 867 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 KIAA0895LQ68EN5 471 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 OGFOD2Q6N063 350 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 GJD3Q8N144 294 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 CACTIN-AS1Q8N1I8 211 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 THAP3Q8WTV1 239 aaPredicted RBP10.03□□□□□ -0.8
VPS11-208ENST00000621676 CSF3RQ99062 836 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 C1QTNF3Q9BXJ4 246 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 ZCCHC3Q9NUD5 404 aaKnown RBP10.03□□□□□ -0.8
VPS11-208ENST00000621676 EVA1BQ9NVM1 165 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 RLIMQ9NVW2 624 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 ZIM2Q9NZV7 527 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 PCDHB11Q9Y5F2 797 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 PCDHA9Q9Y5H5 950 aa10.03□□□□□ -0.8
VPS11-208ENST00000621676 C7orf72A4D263 438 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 SOBPA7XYQ1 873 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 PRAMEF26H0Y7S4 382 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 PRR35P0CG20 571 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 EEF1B2P24534 225 aaKnown RBP10.02□□□□□ -0.8
VPS11-208ENST00000621676 ZNF763Q0D2J5 394 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 RIPK1Q13546 671 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 DEPDC1Q5TB30 811 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 HMBOX1Q6NT76 420 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 ACOT4Q8N9L9 421 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 VPS37AQ8NEZ2 397 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 ZG16BQ96DA0 208 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 MYCBPQ99417 103 aaPredicted RBP10.02□□□□□ -0.8
VPS11-208ENST00000621676 EFCAB11Q9BUY7 163 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 CLMPQ9H6B4 373 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 ACTR10Q9NZ32 417 aa10.02□□□□□ -0.8
VPS11-208ENST00000621676 HELZP42694 1942 aaKnown RBP10.02□□□□□ -0.81
VPS11-208ENST00000621676 A0A1W2PPC4 97 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 CDC14CA4D256 554 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 HS6ST1O60243 411 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 FKBP6O75344 327 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 RDH16O75452 317 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 UGT2B7P16662 529 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 RYKP34925 604 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 ARL4DP49703 201 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 C21orf59P57076 290 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 SHC2P98077 582 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 CHRNB3Q05901 458 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 ZIC1Q15915 447 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 FBXO43Q4G163 708 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 PDCD4Q53EL6 469 aaKnown RBP10.02□□□□□ -0.81
VPS11-208ENST00000621676 CAPRIN2Q6IMN6 1127 aaKnown RBP10.02□□□□□ -0.81
VPS11-208ENST00000621676 FIGLAQ6QHK4 219 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 TMEM64Q6YI46 380 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 CEP68Q76N32 757 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 SLC9B2Q86UD5 537 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 OR9A2Q8NGT5 310 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 UBE2FQ969M7 185 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 PEX11GQ96HA9 241 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 AICDAQ9GZX7 198 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 MMADHCQ9H3L0 296 aaPredicted RBP10.02□□□□□ -0.81
VPS11-208ENST00000621676 RMND5AQ9H871 391 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 SLC52A3Q9NQ40 469 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 PRPF19Q9UMS4 504 aaKnown RBP10.02□□□□□ -0.81
VPS11-208ENST00000621676 C17orf113A0A1B0GUU1 675 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 PTGES3LE9PB15 166 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 ZBTB11O95625 1053 aaPredicted RBP10.02□□□□□ -0.81
VPS11-208ENST00000621676 SNAP29O95721 258 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 IL6P05231 212 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 OR12D1P0DN82 309 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 PRPS1L1P21108 318 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 LSM11P83369 360 aaKnown RBP eCLIP10.02□□□□□ -0.81
VPS11-208ENST00000621676 MAD2L1Q13257 205 aaPredicted RBP10.02□□□□□ -0.81
VPS11-208ENST00000621676 ENPP2Q13822 863 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 SWT1Q5T5J6 900 aaKnown RBP10.02□□□□□ -0.81
VPS11-208ENST00000621676 RNF220Q5VTB9 566 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 CEACAM20Q6UY09 585 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 RBM45Q8IUH3 476 aaKnown RBP10.02□□□□□ -0.81
VPS11-208ENST00000621676 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.02□□□□□ -0.81
VPS11-208ENST00000621676 SPACA7Q96KW9 195 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 SGPP1Q9BX95 441 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 SERHLQ9NQF3 203 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 RASSF1Q9NS23 344 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 IL20RAQ9UHF4 553 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 ANAPC2Q9UJX6 822 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 ATMQ13315 3056 aa10.02□□□□□ -0.81
VPS11-208ENST00000621676 SPTY2D1-AS1A0A0U1RR47 76 aa10.01□□□□□ -0.81
VPS11-208ENST00000621676 PRSS51A0A1B0GVH4 220 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms