RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 HAPLN1P10915 354 aaPredicted RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 CFL1P23528 166 aaKnown RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 PSMA3P25788 255 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 SOX3P41225 446 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 INPP1P49441 399 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 WDR5P61964 334 aaKnown RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 BTG1P62324 171 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 RIN1Q13671 783 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF235Q14590 738 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 SHHQ15465 462 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 PUS10Q3MIT2 529 aaKnown RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 RNLSQ5VYX0 342 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 SBSNQ6UWP8 590 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 ARSKQ6UWY0 536 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 PTCHD4Q6ZW05 846 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 ANKS3Q6ZW76 656 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 C16orf62Q7Z3J2 963 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 ADGRG3Q86Y34 549 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 LGI4Q8N135 537 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 STK40Q8N2I9 435 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 UBE2J2Q8N2K1 259 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 Q8N402 240 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 ATP6V1C2Q8NEY4 427 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 OR10Z1Q8NGY1 313 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF431Q8TF32 576 aaPredicted RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 LINC01599Q8WXQ3 324 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 TOE1Q96GM8 510 aaKnown RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 PSKH2Q96QS6 385 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 PANX1Q96RD7 426 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 NTMT1Q9BV86 223 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 CLEC4MQ9H2X3 399 aaPredicted RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 NLKQ9UBE8 527 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 TMCC3Q9ULS5 477 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 NDRG2Q9UN36 371 aaKnown RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 PCDHB7Q9Y5E2 793 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 MAGEB17A8MXT2 336 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 INMT-MINDY4F8WBC2 141 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 FPGTO14772 594 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 TSPAN4O14817 238 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 TPST2O60704 377 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 FAM157BP0CG42 384 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 ACPPP15309 386 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 CTPS1P17812 591 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 DDCP20711 480 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 PPIBP23284 216 aaKnown RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 HMGCLP35914 325 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 HSPA7P48741 367 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 RAB14P61106 215 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 DEFB103AP81534 67 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 SNTA1Q13424 505 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 TEAD4Q15561 434 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 AANATQ16613 207 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF628Q5EBL2 1059 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 SGO1Q5FBB7 561 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 CTSL3PQ5NE16 218 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 GLT6D1Q7Z4J2 308 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 TMCO2Q7Z6W1 182 aaPredicted RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 GALNT10Q86SR1 603 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 RTN4RL1Q86UN2 441 aaPredicted RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 RBFAQ8N0V3 343 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 SLC34A3Q8N130 599 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 LRRC17Q8N6Y2 441 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 OR4K2Q8NGD2 314 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 OR8K5Q8NH50 307 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 UPRTQ96BW1 309 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 FARSBQ9NSD9 589 aaKnown RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 IL20Q9NYY1 176 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 PLEKHB1Q9UF11 243 aaPredicted RBP10.38□□□□□ -0.75
UPF3A-212ENST00000619079 ATPIF1Q9UII2 106 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF451Q9Y4E5 1061 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 CSNK1G3Q9Y6M4 447 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 CLCA3PQ9Y6N3 262 aa10.38□□□□□ -0.75
UPF3A-212ENST00000619079 A0A0U1RQF3 1178 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 AP2A2O94973 939 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 PRAMEF1O95521 474 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 PIRTP0C851 137 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 LHCGRP22888 699 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 EVI2BP34910 448 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 PTGER3P43115 390 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 ABATP80404 500 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 SRSF11Q05519 484 aaKnown RBP10.37□□□□□ -0.75
UPF3A-212ENST00000619079 MTAPQ13126 283 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 DSC3Q14574 896 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 NCF4Q15080 339 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 C18orf21Q32NC0 220 aaPredicted RBP10.37□□□□□ -0.75
UPF3A-212ENST00000619079 GPR139Q6DWJ6 353 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 SYNPOQ8N3V7 929 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF366Q8N895 744 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 FAM46DQ8NEK8 389 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 PROKR2Q8NFJ6 384 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 OR4C15Q8NGM1 316 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 SPPL2AQ8TCT8 520 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 HERVK_113Q902F9 699 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 PMEPA1Q969W9 287 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 MTERF3Q96E29 417 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 ZBED6CLQ96FA7 236 aaPredicted RBP10.37□□□□□ -0.75
UPF3A-212ENST00000619079 ZSWIM3Q96MP5 696 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 SERPINB11Q96P15 392 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms