RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SLAMF1Q13291 335 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 CAMK2BQ13554 666 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 DSG2Q14126 1118 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 SLC9A5Q14940 896 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 IL23RQ5VWK5 629 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 METTL21CQ5VZV1 264 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 ZNF385CQ66K41 422 aaPredicted RBP13.59□□□□□ -0.23
UPF1-211ENST00000600868 CYP20A1Q6UW02 462 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 DTWD1Q8N5C7 304 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 CLIP3Q96DZ5 547 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 MMABQ96EY8 250 aaPredicted RBP13.59□□□□□ -0.23
UPF1-211ENST00000600868 RILPQ96NA2 401 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 DPH2Q9BQC3 489 aaPredicted RBP13.59□□□□□ -0.23
UPF1-211ENST00000600868 ULBP3Q9BZM4 244 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 SPRY4Q9C004 299 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 LYRM4Q9HD34 91 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 LYARQ9NX58 379 aaKnown RBP13.59□□□□□ -0.23
UPF1-211ENST00000600868 DLGAP4Q9Y2H0 992 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 WBP11Q9Y2W2 641 aaKnown RBP13.59□□□□□ -0.23
UPF1-211ENST00000600868 TMEM184BQ9Y519 407 aaPredicted RBP13.59□□□□□ -0.23
UPF1-211ENST00000600868 POLR3HQ9Y535 204 aaPredicted RBP13.59□□□□□ -0.23
UPF1-211ENST00000600868 PCDHGA7Q9Y5G6 932 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 SCN3AQ9NY46 2000 aa13.59□□□□□ -0.23
UPF1-211ENST00000600868 GNG14A0A1W2PPG7 69 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 ZNF860A6NHJ4 632 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 TMPRSS11DO60235 418 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 RDH16O75452 317 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 DXOO77932 396 aaKnown RBP13.58□□□□□ -0.24
UPF1-211ENST00000600868 STK17BO94768 372 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 GBAP04062 536 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 ALDOCP09972 364 aaKnown RBP13.58□□□□□ -0.24
UPF1-211ENST00000600868 FAM58BPP0C7Q3 252 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 BCKDHAP12694 445 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 SDC1P18827 310 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 ITGAXP20702 1163 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 RBMS1P29558 406 aaKnown RBP13.58□□□□□ -0.24
UPF1-211ENST00000600868 OR1D4P47884 311 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 MAPK12P53778 367 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 IRX1P78414 480 aaPredicted RBP13.58□□□□□ -0.24
UPF1-211ENST00000600868 DCDP81605 110 aaKnown RBP13.58□□□□□ -0.24
UPF1-211ENST00000600868 ZNF763Q0D2J5 394 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 ABHD18Q0P651 414 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 FOXC1Q12948 553 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 RUNX2Q13950 521 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 RTP5Q14D33 572 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 GSTA3Q16772 222 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 C1orf189Q5VU69 101 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 DSELQ8IZU8 1212 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.58□□□□□ -0.24
UPF1-211ENST00000600868 C1orf50Q9BV19 199 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 EBPLQ9BY08 206 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 ZNF304Q9HCX3 659 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 AIG1Q9NVV5 245 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 KCMF1Q9P0J7 381 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 PHF11Q9UIL8 331 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 DAPP1Q9UN19 280 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 TRIM33Q9UPN9 1127 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 WASF3Q9UPY6 502 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 MAP4K5Q9Y4K4 846 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 ASB4Q9Y574 426 aa13.58□□□□□ -0.24
UPF1-211ENST00000600868 CDRT15L2A8MXV6 281 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 E9PBE3 544 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 MEN1O00255 615 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 UBDO15205 165 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 CHST10O43529 356 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 KLHL41O60662 606 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 DNAJB6O75190 326 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 GUCY1B2O75343 617 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 DLGAP3O95886 979 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 KLK3P07288 261 aaPredicted RBP13.57□□□□□ -0.24
UPF1-211ENST00000600868 PIM1P11309 404 aaPredicted RBP13.57□□□□□ -0.24
UPF1-211ENST00000600868 IDO1P14902 403 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 AGXTP21549 392 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 CD82P27701 267 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 ASMTP46597 345 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 MRPL19P49406 292 aaKnown RBP13.57□□□□□ -0.24
UPF1-211ENST00000600868 DIO3P55073 304 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 LIM2P55344 173 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 COL9A2Q14055 689 aaPredicted RBP13.57□□□□□ -0.24
UPF1-211ENST00000600868 MAP7Q14244 749 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 NKAIN1Q4KMZ8 207 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 GKAP1Q5VSY0 366 aaPredicted RBP13.57□□□□□ -0.24
UPF1-211ENST00000600868 TMEM198Q66K66 360 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 GPR180Q86V85 440 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 FAM9CQ8IZT9 166 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 CA13Q8N1Q1 262 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 LIX1Q8N485 282 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 METTL27Q8N6F8 245 aaPredicted RBP13.57□□□□□ -0.24
UPF1-211ENST00000600868 OR5T3Q8NGG3 340 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 C16orf78Q8WTQ4 265 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 TM4SF18Q96CE8 201 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 MAPKAP1Q9BPZ7 522 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 BRINP2Q9C0B6 783 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 MYNNQ9NPC7 610 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 MS4A12Q9NXJ0 267 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 FOXJ2Q9P0K8 574 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 KLK13Q9UKR3 277 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 GPR45Q9Y5Y3 372 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 MAU2Q9Y6X3 613 aa13.57□□□□□ -0.24
UPF1-211ENST00000600868 PROM1O43490 865 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms