RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SMYD2Q9NRG4 433 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 CD274Q9NZQ7 290 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 WHRNQ9P202 907 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 FBXW2Q9UKT8 454 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 RNF112Q9ULX5 631 aa9.16□□□□□ -0.94
VRK3-216ENST00000599342 MTO1Q9Y2Z2 717 aaKnown RBP9.16□□□□□ -0.94
VRK3-216ENST00000599342 SVILO95425 2214 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 TCRBV9S1A1TA0A576 114 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 CXorf49A8MYA2 514 aaPredicted RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 KLRC4-KLRK1H3BQV0 150 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 PRRG2O14669 202 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 TFECO14948 347 aaPredicted RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 CCNT2O60583 730 aaKnown RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 ITGA10O75578 1167 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 STK16O75716 305 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 WISP2O76076 250 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 IFNA16P05015 189 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 CD1DP15813 335 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 AGAP20933 346 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 HTR1EP28566 365 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 GRNP28799 593 aaKnown RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 TRHRP34981 398 aaPredicted RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 SPRP35270 261 aaPredicted RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 GGT5P36269 586 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 MEOX1P50221 254 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 MTTPP55157 894 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 RAB10P61026 200 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 CBLBQ13191 982 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 LAPTM5Q13571 262 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 RUNX2Q13950 521 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 HIST2H2ACQ16777 129 aaPredicted RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 FBXO48Q5FWF7 155 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 XKR6Q5GH73 641 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 CDKL4Q5MAI5 379 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 HIST2H2AA3Q6FI13 130 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 Q6ZPB1 254 aaPredicted RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 C3orf62Q6ZUJ4 267 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 RAPH1Q70E73 1250 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 SIAH3Q8IW03 269 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 SCUBE1Q8IWY4 988 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 MCEMP1Q8IX19 187 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 ZNF595Q8IYB9 648 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 CYP4Z2PQ8N1L4 340 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 CPSF7Q8N684 471 aaKnown RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 POGLUT1Q8NBL1 392 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 APCDD1LQ8NCL9 501 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 PDPRQ8NCN5 879 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 NCLNQ969V3 563 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 ESAMQ96AP7 390 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 PTCD3Q96EY7 689 aaKnown RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 GPR22Q99680 433 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 ERP44Q9BS26 406 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 EFCAB11Q9BUY7 163 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 TRIM45Q9H8W5 580 aaPredicted RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 ADAP2Q9NPF8 381 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 PYCARDQ9ULZ3 195 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 ZNF835Q9Y2P0 537 aa9.15□□□□□ -0.94
VRK3-216ENST00000599342 UTP11Q9Y3A2 253 aaKnown RBP9.15□□□□□ -0.94
VRK3-216ENST00000599342 UTP20O75691 2785 aaKnown RBP9.14□□□□□ -0.95
VRK3-216ENST00000599342 PRRC2CQ9Y520 2896 aaKnown RBP9.14□□□□□ -0.95
VRK3-216ENST00000599342 FAM159BA6NKW6 160 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 A8MVJ9 347 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 SUPT3HB4E1H0 165 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 TAPBPO15533 448 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 RAD51CO43502 376 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 SUPT3HO75486 399 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 WISP3O95389 354 aaPredicted RBP9.14□□□□□ -0.95
VRK3-216ENST00000599342 GSTA2P09210 222 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 PRF1P14222 555 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 COX6B1P14854 86 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 TFEBP19484 476 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 CERS1P27544 350 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 STX2P32856 288 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 PTGER4P35408 488 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 KCNC1P48547 511 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 SSR4P51571 173 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 LIM2P55344 173 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 ADORA2A-AS1P86434 159 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 HSF1Q00613 529 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 IRF8Q02556 426 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 C2orf54Q08AI8 447 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 STX4Q12846 297 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 BMPR2Q13873 1038 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 DOC2AQ14183 400 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 SLMAPQ14BN4 828 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 EFTUD2Q15029 972 aaKnown RBP eCLIP9.14□□□□□ -0.953e-6■■□□□ 13.2
VRK3-216ENST00000599342 OR4D1Q15615 310 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 ELAVL1Q15717 326 aaKnown RBP9.14□□□□□ -0.95
VRK3-216ENST00000599342 ZNF630Q2M218 657 aaPredicted RBP9.14□□□□□ -0.95
VRK3-216ENST00000599342 GRTP1Q5TC63 336 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 CYS1Q717R9 158 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 LRRC70Q7Z2Q7 622 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 GDF7Q7Z4P5 450 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 CLNKQ7Z7G1 428 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 TBC1D1Q86TI0 1168 aaPredicted RBP9.14□□□□□ -0.95
VRK3-216ENST00000599342 CCDC25Q86WR0 208 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 ARMC10Q8N2F6 343 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 TMEM132CQ8N3T6 1108 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 SRFBP1Q8NEF9 429 aaKnown RBP9.14□□□□□ -0.95
VRK3-216ENST00000599342 SPATA4Q8NEY3 305 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms