RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 DEPDC1Q5TB30 811 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 MFSD4BQ5TF39 518 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 AGAP7PQ5VUJ5 663 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 KHDRBS2Q5VWX1 349 aaKnown RBP15.16■□□□□ 0.02
TRIM28-213ENST00000598355 EMBQ6PCB8 327 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 Q6ZS92 163 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 CYP4X1Q8N118 509 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 EPS8L3Q8TE67 593 aaKnown RBP15.16■□□□□ 0.02
TRIM28-213ENST00000598355 TM9SF4Q92544 642 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 CAVIN3Q969G5 261 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 FAR2Q96K12 515 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 AGAP4Q96P64 663 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 TBCDQ9BTW9 1192 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 ZNF717Q9BY31 904 aaPredicted RBP15.16■□□□□ 0.02
TRIM28-213ENST00000598355 ROGDIQ9GZN7 287 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 NOL11Q9H8H0 719 aaKnown RBP15.16■□□□□ 0.02
TRIM28-213ENST00000598355 LYRM4Q9HD34 91 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 PRDM9Q9NQV7 894 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 KCMF1Q9P0J7 381 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 EMCNQ9ULC0 261 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 RNF11Q9Y3C5 154 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 IGHV3-20A0A0C4DH32 117 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 A0A1B0GTL3 188 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 A0A1W2PPM1 405 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 GOLGA8RI6L899 631 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 FOXE1O00358 373 aaPredicted RBP15.15■□□□□ 0.02
TRIM28-213ENST00000598355 CYR61O00622 381 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 DLX3O60479 287 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 GLRA3O75311 464 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 SEC24DO94855 1032 aaPredicted RBP15.15■□□□□ 0.02
TRIM28-213ENST00000598355 CLDN9O95484 217 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 ITGAMP11215 1152 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 PCNAP12004 261 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 ICAM2P13598 275 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 HIST1H1TP22492 207 aaPredicted RBP15.15■□□□□ 0.02
TRIM28-213ENST00000598355 ATP5A1P25705 553 aaKnown RBP15.15■□□□□ 0.02
TRIM28-213ENST00000598355 HNRNPFP52597 415 aaKnown RBP15.15■□□□□ 0.02
TRIM28-213ENST00000598355 LIM2P55344 173 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 HERVK_113P63132 956 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 BTG2P78543 158 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 SFT2D3Q587I9 215 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 IRAK1BP1Q5VVH5 260 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 H3F3CQ6NXT2 135 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 PAPD4Q6PIY7 484 aaKnown RBP15.15■□□□□ 0.02
TRIM28-213ENST00000598355 ISLR2Q6UXK2 745 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 RNF175Q8N4F7 328 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 AMER2Q8N7J2 671 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 TMEM52Q8NDY8 209 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 BRIX1Q8TDN6 353 aaKnown RBP15.15■□□□□ 0.02
TRIM28-213ENST00000598355 REPS1Q96D71 796 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 TMEM237Q96Q45 408 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 LMF1Q96S06 567 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 CSF3RQ99062 836 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 ERVK-6Q9BXR3 956 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 ZNF225Q9UK10 706 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 B3GNT3Q9Y2A9 372 aa15.15■□□□□ 0.02
TRIM28-213ENST00000598355 FAM227AF5H4B4 570 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 TGFBR3LH3BV60 316 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 PSMD12O00232 456 aaPredicted RBP15.14■□□□□ 0.01
TRIM28-213ENST00000598355 PLPP1O14494 284 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 PRMT3O60678 531 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 B4GALT2O60909 372 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 TGFB1P01137 390 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 MAOAP21397 527 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 ATP5F1P24539 256 aaPredicted RBP15.14■□□□□ 0.01
TRIM28-213ENST00000598355 SLCO1A2P46721 670 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 CCNG1P51959 295 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 HSD17B7P56937 341 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 FOXK1P85037 733 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 CUL3Q13618 768 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 TERF2Q15554 542 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 ZRSR2Q15696 482 aaKnown RBP15.14■□□□□ 0.01
TRIM28-213ENST00000598355 EXT1Q16394 746 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 CPSF6Q16630 551 aaKnown RBP eCLIP15.14■□□□□ 0.01
TRIM28-213ENST00000598355 COLEC12Q5KU26 742 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 ZNF678Q5SXM1 525 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 CHSY3Q70JA7 882 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 RPS27LQ71UM5 84 aaKnown RBP15.14■□□□□ 0.01
TRIM28-213ENST00000598355 ZNF595Q8IYB9 648 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 ZCCHC7Q8N3Z6 543 aaKnown RBP15.14■□□□□ 0.01
TRIM28-213ENST00000598355 RIBC1Q8N443 379 aaPredicted RBP15.14■□□□□ 0.01
TRIM28-213ENST00000598355 MREGQ8N565 214 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 ACOT4Q8N9L9 421 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 MYRIPQ8NFW9 859 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 M1APQ8TC57 530 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 MIB2Q96AX9 1013 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 L3HYPDHQ96EM0 354 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 CDK15Q96Q40 435 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 MTERF1Q99551 399 aaKnown RBP15.14■□□□□ 0.01
TRIM28-213ENST00000598355 LPAR4Q99677 370 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 TRIM4Q9C037 500 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 RNF32Q9H0A6 362 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 OR51B5Q9H339 312 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 COPS7BQ9H9Q2 264 aaPredicted RBP15.14■□□□□ 0.01
TRIM28-213ENST00000598355 MMP25Q9NPA2 562 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 NECTIN3Q9NQS3 549 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 MKS1Q9NXB0 559 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 DCDC2Q9UHG0 476 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 RAB21Q9UL25 225 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 PPIEQ9UNP9 301 aaKnown RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms