RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	PLA2G16	P53816	162 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	ARL4C	P56559	192 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	CDKL1	Q00532	357 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	DR1	Q01658	176 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	PDIA2	Q13087	525 aa	Known RBP	9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	SLC13A2	Q13183	592 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	FRG1	Q14331	258 aa	Known RBP	9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	CMPK2	Q5EBM0	449 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	FBXO48	Q5FWF7	155 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	TMIGD1	Q6UXZ0	262 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	CAPN12	Q6ZSI9	719 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	VN1R5	Q7Z5H4	357 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	CLNK	Q7Z7G1	428 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	ADAMTSL2	Q86TH1	951 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	KLHDC8A	Q8IYD2	350 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	SPATA6L	Q8N4H0	392 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	MARVELD2	Q8N4S9	558 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	TMEM156	Q8N614	296 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	POGLUT1	Q8NBL1	392 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	FBXO36	Q8NEA4	188 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	NCLN	Q969V3	563 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	RHBDF1	Q96CC6	855 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	LRRC39	Q96DD0	335 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	VMP1	Q96GC9	406 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	FAR2	Q96K12	515 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	QRFPR	Q96P65	431 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	CSF3R	Q99062	836 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	PRTFDC1	Q9NRG1	225 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	KCMF1	Q9P0J7	381 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	CTNNAL1	Q9UBT7	734 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	HRH3	Q9Y5N1	445 aa		9.81	□□□□□ -0.84
LSM4-205	ENST00000597776	ANKRD17	O75179	2603 aa	Known RBP	9.81	□□□□□ -0.84
LSM4-205	ENST00000597776		A0A0G2JMM0	328 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776		A0A1W2PPB8	328 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776		A0A1W2PRS3	328 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	PINLYP	A6NC86	204 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	KIR3DP1	A8MWS1	328 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	KLRC4-KLRK1	H3BQV0	150 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	TAPBP	O15533	448 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	B3GALT2	O43825	422 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	PRAMEF4	O60810	478 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	H2AFY	O75367	372 aa	Known RBP	9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	OR2J2	O76002	312 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	TCP1	P17987	556 aa	Known RBP	9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	TFEB	P19484	476 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	CERS1	P27544	350 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	SSR4	P51571	173 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	GPR143	P51810	404 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	RAB38	P57729	211 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	TERF2	Q15554	542 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	XKR6	Q5GH73	641 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	PRAMEF9	Q5VWM5	478 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	MEX3B	Q6ZN04	569 aa	Known RBP	9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	CEP128	Q6ZU80	1094 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	SYDE1	Q6ZW31	735 aa	Predicted RBP	9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	RPRML	Q8N4K4	120 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	ZFP62	Q8NB50	900 aa	Predicted RBP	9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	OR52N2	Q8NGI0	321 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	C16orf52	Q8NHV5	167 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	FAM57A	Q8TBR7	257 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	CA5BP1	Q8WTZ4	195 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	ANKRD7	Q92527	254 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	ESAM	Q96AP7	390 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	VPS39	Q96JC1	886 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	SPOCK3	Q9BQ16	436 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	TMEM79	Q9BSE2	394 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	DEFB127	Q9H1M4	99 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	KCNF1	Q9H3M0	494 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	RHOJ	Q9H4E5	214 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	CAB39L	Q9H9S4	337 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	ADAP2	Q9NPF8	381 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	SMYD2	Q9NRG4	433 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	DEPP	Q9NTK1	212 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	MOCS1	Q9NZB8	636 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	ERVK-11	Q9UQG0	969 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	CCDC168	Q8NDH2	2452 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	F8	P00451	2351 aa		9.8	□□□□□ -0.84
LSM4-205	ENST00000597776	GTF3C1	Q12789	2109 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	TMEM200C	A6NKL6	621 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	USP27X	A6NNY8	438 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	FAM166B	A8MTA8	275 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776		G3V3Y1	287 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	CYR61	O00622	381 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	CLDN4	O14493	209 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	PHGDH	O43175	533 aa	Known RBP	9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	ZSCAN12	O43309	604 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	CLEC3A	O75596	197 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	ZFAND5	O76080	213 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	OR6B1	O95007	311 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	WISP3	O95389	354 aa	Predicted RBP	9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	TUBB4A	P04350	444 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	IFNA16	P05015	189 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	RPL21	P46778	160 aa	Known RBP	9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	HSPA7	P48741	367 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	LIM2	P55344	173 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	HSD17B7	P56937	341 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	MRPS25	P82663	173 aa	Known RBP	9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	TLE4	Q04727	773 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	TGFBI	Q15582	683 aa		9.79	□□□□□ -0.84
LSM4-205	ENST00000597776	CREG2	Q8IUH2	290 aa		9.79	□□□□□ -0.84

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