RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 UBE3DQ7Z6J8 389 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 C10orf107Q8IVU9 208 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 CLEC1AQ8NC01 280 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 PKNOX2Q96KN3 472 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 TRMOQ9BU70 441 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 LYRM4Q9HD34 91 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 LANCL2Q9NS86 450 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 NMRK1Q9NWW6 199 aa24.3■■□□□ 1.48
TRIM28-204ENST00000594806 LOC102723996A0A087X1L8 192 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 A0A0G2JN53 185 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 KLHL41O60662 606 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 JRKO75564 520 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 C8orf89P0DMQ9 161 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 HSD3B1P14060 373 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 HIST1H1TP22492 207 aaPredicted RBP24.29■■□□□ 1.48
TRIM28-204ENST00000594806 ATP5A1P25705 553 aaKnown RBP24.29■■□□□ 1.48
TRIM28-204ENST00000594806 HSD3B2P26439 372 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 NEK2P51955 445 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 RAB38P57729 211 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 RUNX2Q13950 521 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 CASP8Q14790 479 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 OR4C11Q6IEV9 310 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 PCSK4Q6UW60 755 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 TMEM151BQ8IW70 566 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 ACOT4Q8N9L9 421 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 OR11G2Q8NGC1 345 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 SELENOMQ8WWX9 145 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 CNDP1Q96KN2 507 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 ATP13A2Q9NQ11 1180 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 AHSPQ9NZD4 102 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 SLC17A7Q9P2U7 560 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 DAPP1Q9UN19 280 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 G3BP2Q9UN86 482 aaKnown RBP24.29■■□□□ 1.48
TRIM28-204ENST00000594806 MRPS33Q9Y291 106 aaKnown RBP24.29■■□□□ 1.48
TRIM28-204ENST00000594806 SPACA6W5XKT8 324 aa24.29■■□□□ 1.48
TRIM28-204ENST00000594806 SCN2AQ99250 2005 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 A0A1B0GTL3 188 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 MKRN2OSH3BPM6 223 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 TM9SF1O15321 606 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 HPP00738 406 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 CREB1P16220 341 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 HMOX2P30519 316 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 SSR2P43308 183 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 SOX8P57073 446 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 AIMP2Q13155 320 aaKnown RBP24.28■■□□□ 1.48
TRIM28-204ENST00000594806 KCNAB2Q13303 367 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 QSOX2Q6ZRP7 698 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 ZCCHC7Q8N3Z6 543 aaKnown RBP24.28■■□□□ 1.48
TRIM28-204ENST00000594806 CDYL2Q8N8U2 506 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 METTL6Q8TCB7 284 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 AGAP11Q8TF27 550 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 MID1IP1Q9NPA3 183 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 FBXL4Q9UKA2 621 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 MMACHCQ9Y4U1 282 aa24.28■■□□□ 1.48
TRIM28-204ENST00000594806 ZFYVE26Q68DK2 2539 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 BLACEA4D250 179 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 SYNDIG1LA6NDD5 238 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 CLDN4O14493 209 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 DNAJB6O75190 326 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 ULK1O75385 1050 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 FAM87AP0C7U9 286 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 CERS1P27544 350 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 RHAGQ02094 409 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 NDUFAF7Q7L592 441 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 RNF175Q8N4F7 328 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 C7orf57Q8NEG2 295 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 MTFMTQ96DP5 389 aaKnown RBP24.27■■□□□ 1.48
TRIM28-204ENST00000594806 MS4A12Q9NXJ0 267 aa24.27■■□□□ 1.48
TRIM28-204ENST00000594806 PCDHGA9Q9Y5G4 932 aaKnown RBP24.27■■□□□ 1.48
TRIM28-204ENST00000594806 MANBAO00462 879 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 PLPP1O14494 284 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 PRMT3O60678 531 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 CEACAM4O75871 244 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 ZWINTO95229 277 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 ALDH3A1P30838 453 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 ETV4P43268 484 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 LIM2P55344 173 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 CPZQ66K79 652 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 ZNF793Q6ZN11 406 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 ZNF595Q8IYB9 648 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 EXD3Q8N9H8 876 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 GATA5Q9BWX5 397 aaPredicted RBP24.26■■□□□ 1.47
TRIM28-204ENST00000594806 TRIM55Q9BYV6 548 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 DDX31Q9H8H2 851 aaKnown RBP24.26■■□□□ 1.47
TRIM28-204ENST00000594806 PRDM9Q9NQV7 894 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 RIC8BQ9NVN3 520 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 PCSK5Q92824 1860 aa24.26■■□□□ 1.47
TRIM28-204ENST00000594806 NPHS1O60500 1241 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 B4GALT2O60909 372 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 SH3BGRLO75368 114 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 PDYNP01213 254 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 SERPINB5P36952 375 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 CCL11P51671 97 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 HSD17B7P56937 341 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 AP2B1P63010 937 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 GALNT1Q10472 559 aaPredicted RBP24.25■■□□□ 1.47
TRIM28-204ENST00000594806 CSTF3Q12996 717 aaKnown RBP24.25■■□□□ 1.47
TRIM28-204ENST00000594806 NSDHLQ15738 373 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 FAAH2Q6GMR7 532 aa24.25■■□□□ 1.47
TRIM28-204ENST00000594806 PAGE2Q7Z2X7 111 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms