RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 APOPT1Q96IL0 206 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 FRG2BQ96QU4 278 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 RBCK1Q9BYM8 510 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 ZNF700Q9H0M5 742 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 ELOVL6Q9H5J4 265 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 ZNF71Q9NQZ8 489 aaPredicted RBP14.16□□□□□ -0.14
UPF1-202ENST00000594243 LANCL2Q9NS86 450 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 RIC8BQ9NVN3 520 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 SENP1Q9P0U3 644 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 TRPS1Q9UHF7 1281 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 PPT2Q9UMR5 302 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 SNX6Q9UNH7 406 aa14.16□□□□□ -0.14
UPF1-202ENST00000594243 MRPS33Q9Y291 106 aaKnown RBP14.16□□□□□ -0.14
UPF1-202ENST00000594243 CCDC151A5D8V7 595 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 PPP6CO00743 305 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 CLDN4O14493 209 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 RGS16O15492 202 aaPredicted RBP14.15□□□□□ -0.14
UPF1-202ENST00000594243 PRMT3O60678 531 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 SH3BGRLO75368 114 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 COX6A1P12074 109 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 TSPAN8P19075 237 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 HIST1H1TP22492 207 aaPredicted RBP14.15□□□□□ -0.14
UPF1-202ENST00000594243 ATP5A1P25705 553 aaKnown RBP14.15□□□□□ -0.14
UPF1-202ENST00000594243 ITGA3P26006 1051 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 SSR2P43308 183 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 NEK2P51955 445 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 PGDP52209 483 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 RAB38P57729 211 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 DNAJB13P59910 316 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 AP2B1P63010 937 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 RHAGQ02094 409 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 EEF1A2Q05639 463 aaKnown RBP14.15□□□□□ -0.14
UPF1-202ENST00000594243 NFATC3Q12968 1075 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 MYBPC3Q14896 1274 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 QSOX2Q6ZRP7 698 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 ASB18Q6ZVZ8 466 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 CPEB2Q7Z5Q1 589 aaKnown RBP14.15□□□□□ -0.14
UPF1-202ENST00000594243 UBE3DQ7Z6J8 389 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 ANKRD37Q7Z713 158 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 HPS6Q86YV9 775 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 PARP9Q8IXQ6 854 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 IQCKQ8N0W5 287 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 SHISA5Q8N114 240 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 ZNF843Q8N446 348 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 RNF175Q8N4F7 328 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 ACOT4Q8N9L9 421 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 PTCHD1Q96NR3 888 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 ZNF382Q96SR6 550 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 SERPINI1Q99574 410 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 TUBB6Q9BUF5 446 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 ZNF160Q9HCG1 818 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 PRDM9Q9NQV7 894 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 OXSMQ9NWU1 459 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 C5AR2Q9P296 337 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 DAPP1Q9UN19 280 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 TP53TG5Q9Y2B4 290 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 PLLPQ9Y342 182 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 ZNF451Q9Y4E5 1061 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 SPACA6W5XKT8 324 aa14.15□□□□□ -0.14
UPF1-202ENST00000594243 OR2W5A6NFC9 320 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 B8ZZF3 427 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 FAM227AF5H4B4 570 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 H3BQF6 201 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 MASP2O00187 686 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 SAP18O00422 153 aaKnown RBP14.14□□□□□ -0.15
UPF1-202ENST00000594243 RTCAO00442 366 aaKnown RBP14.14□□□□□ -0.15
UPF1-202ENST00000594243 OR4F21O95013 312 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 SCELO95171 688 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 ALPPP05187 535 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 CERS1P27544 350 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 EFNA3P52797 238 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 LIM2P55344 173 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 PKNOX1P55347 436 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 ACTN3Q08043 901 aaPredicted RBP14.14□□□□□ -0.15
UPF1-202ENST00000594243 ZNF844Q08AG5 666 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 ASPHQ12797 758 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 LCP2Q13094 533 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 ABRAXAS2Q15018 415 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 CFAP157Q5JU67 520 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 LETMD1Q6P1Q0 360 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 GPRIN3Q6ZVF9 776 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 KBTBD2Q8IY47 623 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 ZNF595Q8IYB9 648 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 CCNYL1Q8N7R7 359 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 ARMC2Q8NEN0 867 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 THOC3Q96J01 351 aaKnown RBP14.14□□□□□ -0.15
UPF1-202ENST00000594243 ZIM3Q96PE6 472 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 SMAD5Q99717 465 aaKnown RBP14.14□□□□□ -0.15
UPF1-202ENST00000594243 NUDT9Q9BW91 350 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 LHPPQ9H008 270 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 LYRM4Q9HD34 91 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 NMRK1Q9NWW6 199 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 MS4A12Q9NXJ0 267 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 AHSPQ9NZD4 102 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 MMACHCQ9Y4U1 282 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 PCSK5Q92824 1860 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 CCDC88CQ9P219 2028 aa14.14□□□□□ -0.15
UPF1-202ENST00000594243 A0A1B0GTL3 188 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 BLACEA4D250 179 aa14.13□□□□□ -0.15
UPF1-202ENST00000594243 SYNDIG1LA6NDD5 238 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms