RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 SPATA4Q8NEY3 305 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 B3GNT7Q8NFL0 401 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 ADAMTS18Q8TE60 1221 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 SREK1Q8WXA9 508 aaKnown RBP13.39□□□□□ -0.27
VMP1-206ENST00000587945 CDKL2Q92772 493 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 EXT2Q93063 718 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 TSPAN17Q96FV3 270 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 CSF3RQ99062 836 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 GPR22Q99680 433 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 RBBP8Q99708 897 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 CPNE1Q99829 537 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 REXO4Q9GZR2 422 aaKnown RBP13.39□□□□□ -0.27
VMP1-206ENST00000587945 NT5DC2Q9H857 520 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 TRIM45Q9H8W5 580 aaPredicted RBP13.39□□□□□ -0.27
VMP1-206ENST00000587945 GPRC5BQ9NZH0 403 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 CD274Q9NZQ7 290 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 WHRNQ9P202 907 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 ZNF223Q9UK11 482 aaPredicted RBP13.39□□□□□ -0.27
VMP1-206ENST00000587945 FBXW2Q9UKT8 454 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 ASB1Q9Y576 335 aa13.39□□□□□ -0.27
VMP1-206ENST00000587945 KLF2Q9Y5W3 355 aaPredicted RBP13.39□□□□□ -0.27
VMP1-206ENST00000587945 ANKDD1BA6NHY2 528 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 FAM159BA6NKW6 160 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 CLGNO14967 610 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 EIF3HO15372 352 aaKnown RBP eCLIP13.38□□□□□ -0.27
VMP1-206ENST00000587945 PRKNO60260 465 aaPredicted RBP13.38□□□□□ -0.27
VMP1-206ENST00000587945 STK16O75716 305 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 MLYCDO95822 493 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 STMN1P16949 149 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 ZNF24P17028 368 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 EPORP19235 508 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 CD22P20273 847 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 TNFRSF8P28908 595 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 GGT5P36269 586 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 GP5P40197 560 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 RFC3P40938 356 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 KCNC1P48547 511 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 CLCN2P51788 898 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 RAB38P57729 211 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 SLC13A2Q13183 592 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 DOC2AQ14183 400 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 CDSNQ15517 529 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 TRADDQ15628 312 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 XKR6Q5GH73 641 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 SULT1C3Q6IMI6 304 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 MTFR2Q6P444 385 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 ABHD17CQ6PCB6 329 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 BNC2Q6ZN30 1099 aaPredicted RBP13.38□□□□□ -0.27
VMP1-206ENST00000587945 Q6ZPB1 254 aaPredicted RBP13.38□□□□□ -0.27
VMP1-206ENST00000587945 CHERPQ8IWX8 916 aaKnown RBP13.38□□□□□ -0.27
VMP1-206ENST00000587945 MCEMP1Q8IX19 187 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 CTAGE3PQ8IX95 158 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 OR2L5Q8NG80 312 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 NCLNQ969V3 563 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 TMEM125Q96AQ2 219 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 F2RL3Q96RI0 385 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 NPLQ9BXD5 320 aaPredicted RBP13.38□□□□□ -0.27
VMP1-206ENST00000587945 CAPS2Q9BXY5 557 aa13.38□□□□□ -0.27
VMP1-206ENST00000587945 CNOT10Q9H9A5 744 aaKnown RBP13.38□□□□□ -0.27
VMP1-206ENST00000587945 LIN28AQ9H9Z2 209 aaKnown RBP13.38□□□□□ -0.27
VMP1-206ENST00000587945 MYO7BQ6PIF6 2116 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 SCN2AQ99250 2005 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 CYR61O00622 381 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 CLDN4O14493 209 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 FCHO1O14526 889 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 CCNT2O60583 730 aaKnown RBP13.37□□□□□ -0.27
VMP1-206ENST00000587945 SH3BGRLO75368 114 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 ITGA10O75578 1167 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 ABOP16442 354 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 PTGER1P34995 402 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 MEOX1P50221 254 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 GPR143P51810 404 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 PLTPP55058 493 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 LIM2P55344 173 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 RAB10P61026 200 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 ATP6V0D1P61421 351 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 DLG1Q12959 904 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 ZKSCAN8Q15776 578 aaPredicted RBP13.37□□□□□ -0.27
VMP1-206ENST00000587945 PDK4Q16654 411 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 ZNF630Q2M218 657 aaPredicted RBP13.37□□□□□ -0.27
VMP1-206ENST00000587945 ADPRMQ3LIE5 342 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 TRIM40Q6P9F5 258 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 C3P1Q6ZMU1 363 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 MAATS1Q7Z4T9 603 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 MDGA2Q7Z553 956 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 FGD2Q7Z6J4 655 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 CMC1Q7Z7K0 106 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 CCDC25Q86WR0 208 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 SULF2Q8IWU5 870 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 ARMC10Q8N2F6 343 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 GHDCQ8N2G8 530 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 C17orf53Q8N3J3 647 aaPredicted RBP13.37□□□□□ -0.27
VMP1-206ENST00000587945 PPM1NQ8N819 430 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 PDPRQ8NCN5 879 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 KIAA1191Q96A73 305 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 SERINC2Q96SA4 455 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 PITHD1Q9GZP4 211 aaPredicted RBP13.37□□□□□ -0.27
VMP1-206ENST00000587945 EHD1Q9H4M9 534 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 ALG9Q9H6U8 611 aa13.37□□□□□ -0.27
VMP1-206ENST00000587945 PTBP2Q9UKA9 531 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms