RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 RIPK1Q13546 671 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 CAPRIN1Q14444 709 aaKnown RBP5.89□□□□□ -1.47
LIG3-206ENST00000586058 AMZ1Q400G9 498 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 PIGGQ5H8A4 983 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 MTX3Q5HYI7 312 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 LAIR1Q6GTX8 287 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 OR52E8Q6IFG1 317 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 ZFP1Q6P2D0 407 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 ERICH5Q6P6B1 374 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 OGFOD3Q6PK18 319 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 CAMKMTQ7Z624 323 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 SPATA24Q86W54 205 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 IFNEQ86WN2 208 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 DHFR2Q86XF0 187 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 PROSER1Q86XN7 944 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 FUNDC1Q8IVP5 155 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 SLC35F3Q8IY50 421 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 KIAA2013Q8IYS2 634 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 KRTCAP2Q8N6L1 136 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 ZBTB44Q8NCP5 570 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 C7orf57Q8NEG2 295 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 OR7A2PQ8NGA2 310 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 WDR48Q8TAF3 677 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 SLC26A7Q8TE54 656 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 NCLNQ969V3 563 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 CCDC74AQ96AQ1 378 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 MOAP1Q96BY2 351 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 MS4A6EQ96DS6 147 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 ZNF764Q96H86 408 aaPredicted RBP5.89□□□□□ -1.47
LIG3-206ENST00000586058 PPM1MQ96MI6 270 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 BBS4Q96RK4 519 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 SPSB2Q99619 263 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 CGREF1Q99674 301 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 SPATA9Q9BWV2 254 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 KLHL25Q9H0H3 589 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 VCXQ9H320 206 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 DCLRE1BQ9H816 532 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 DDX31Q9H8H2 851 aaKnown RBP5.89□□□□□ -1.47
LIG3-206ENST00000586058 CACYBPQ9HB71 228 aaKnown RBP5.89□□□□□ -1.47
LIG3-206ENST00000586058 IL21RQ9HBE5 538 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 SEMA3GQ9NS98 782 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 UCKL1Q9NWZ5 548 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 EHD3Q9NZN3 535 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 SLC7A8Q9UHI5 535 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 ATP6V1HQ9UI12 483 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 BTNL2Q9UIR0 455 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 FBXW2Q9UKT8 454 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 PLCL2Q9UPR0 1127 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 MAN2B2Q9Y2E5 1009 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 KLHL20Q9Y2M5 609 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 PCDHGA7Q9Y5G6 932 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 KLK4Q9Y5K2 254 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 ZNF780BQ9Y6R6 833 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 RNF215Q9Y6U7 377 aa5.89□□□□□ -1.47
LIG3-206ENST00000586058 MN1Q10571 1320 aaPredicted RBP5.89□□□□□ -1.47
LIG3-206ENST00000586058 CACNA1EQ15878 2313 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 IGHV1OR21-1A0A087WYE8 117 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 A0A0A6YYD5 115 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 A0A0G2JN53 185 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 A0A1W2PRB8 838 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 CPED1A4D0V7 1026 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SYNDIG1LA6NDD5 238 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SLC9B1P1A6NJY1 282 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 FAM220BPB1ANY3 271 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 H0YGG7 62 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 RTCAO00442 366 aaKnown RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 FLRT2O43155 660 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 LCMT2O60294 686 aaKnown RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 TBX19O60806 448 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ERAL1O75616 437 aaKnown RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 ATP6V1G2O95670 118 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 CPNE6O95741 557 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ZNF883P0CG24 379 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 HSD17B1P14061 328 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 PVRP15151 417 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ST6GAL1P15907 406 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SLC6A2P23975 617 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 TACR1P25103 407 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ATP5A1P25705 553 aaKnown RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 CERS1P27544 350 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 IL12AP29459 219 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 BSGP35613 385 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 GRK6P43250 576 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 MANFP55145 182 aaKnown RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 MTPNP58546 118 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 RAB8AP61006 207 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ACTR3P61158 418 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ARF3P61204 181 aaPredicted RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 RAE1P78406 368 aaKnown RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 BTN3A2P78410 334 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 HSD11B2P80365 405 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 PRR5P85299 388 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 TNFRSF17Q02223 184 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ACY1Q03154 408 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 BNIP3Q12983 259 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 FADDQ13158 208 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SLAMF1Q13291 335 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 PDE7AQ13946 482 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 TRIM25Q14258 630 aaKnown RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 GRM7Q14831 915 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms