RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	ZNF473	Q8WTR7	871 aa	Known RBP	12.5	□□□□□ -0.41
SREBF1-223	ENST00000584760	MS4A8	Q9BY19	250 aa		12.5	□□□□□ -0.41
SREBF1-223	ENST00000584760	REXO4	Q9GZR2	422 aa	Known RBP	12.5	□□□□□ -0.41
SREBF1-223	ENST00000584760	EPB41L4B	Q9H329	900 aa		12.5	□□□□□ -0.41
SREBF1-223	ENST00000584760	L2HGDH	Q9H9P8	463 aa		12.5	□□□□□ -0.41
SREBF1-223	ENST00000584760	ZNF358	Q9NW07	568 aa		12.5	□□□□□ -0.41
SREBF1-223	ENST00000584760	XPR1	Q9UBH6	696 aa		12.5	□□□□□ -0.41
SREBF1-223	ENST00000584760	LRBA	P50851	2863 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	DOPEY1	Q5JWR5	2465 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	TCRBV16S1A1N1	A0A5B0	115 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	FAM227A	F5H4B4	570 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	PSMD12	O00232	456 aa	Predicted RBP	12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	E2F3	O00716	465 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	PRMT3	O60678	531 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	TSFM	P43897	325 aa	Known RBP	12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	PLA2G16	P53816	162 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	BTG2	P78543	158 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	RUNX2	Q13950	521 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	ZNF169	Q14929	603 aa	Predicted RBP	12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	PCBP2	Q15366	365 aa	Known RBP eCLIP	12.49	□□□□□ -0.41	8e-26	■■■■■ 40.8
SREBF1-223	ENST00000584760	EXT1	Q16394	746 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	BTBD16	Q32M84	506 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	MED27	Q6P2C8	311 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	TRIM40	Q6P9F5	258 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	ABHD17C	Q6PCB6	329 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	GSPT2	Q8IYD1	628 aa	Known RBP	12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	TEX9	Q8N6V9	391 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	OR7G3	Q8NG95	312 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	UBE2E3	Q969T4	207 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	FAR2	Q96K12	515 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	LPAR4	Q99677	370 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	BARD1	Q99728	777 aa	Known RBP	12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	NPL	Q9BXD5	320 aa	Predicted RBP	12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	MMP25	Q9NPA2	562 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	PRDM9	Q9NQV7	894 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	CPSF2	Q9P2I0	782 aa	Known RBP	12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	NTNG1	Q9Y2I2	539 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	CLDN16	Q9Y5I7	305 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	COPG1	Q9Y678	874 aa	Known RBP	12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760	HIVEP3	Q5T1R4	2406 aa		12.49	□□□□□ -0.41
SREBF1-223	ENST00000584760		A0A088AWK7	358 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	ARHGAP10	A1A4S6	786 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	B3GALT2	O43825	422 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	SIX3	O95343	332 aa	Predicted RBP	12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	MYBL2	P10244	700 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	COL6A2	P12110	1019 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	MAOA	P21397	527 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	ZNF10	P21506	573 aa	Predicted RBP	12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	CERS1	P27544	350 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	SERPINB1	P30740	379 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	TNFSF10	P50591	281 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	MTTP	P55157	894 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	RAB38	P57729	211 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	OR4D2	P58180	307 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	SLC26A5	P58743	744 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	TLR1	Q15399	786 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	HIST2H2AC	Q16777	129 aa	Predicted RBP	12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	TSNAXIP1	Q2TAA8	658 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	HIST2H2AA3	Q6FI13	130 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	H3F3C	Q6NXT2	135 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	METTL2B	Q6P1Q9	378 aa	Known RBP	12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	ZNF793	Q6ZN11	406 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	GOLGA7	Q7Z5G4	137 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	UBE3D	Q7Z6J8	389 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	SCUBE1	Q8IWY4	988 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	EIF1AD	Q8N9N8	165 aa	Known RBP	12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	DNAJB14	Q8TBM8	379 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	M1AP	Q8TC57	530 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	ADAMTS18	Q8TE60	1221 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	CNDP1	Q96KN2	507 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	PTCHD1	Q96NR3	888 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	F2RL3	Q96RI0	385 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	SERINC2	Q96SA4	455 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	RNF32	Q9H0A6	362 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	NECTIN3	Q9NQS3	549 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	PRDM7	Q9NQW5	492 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	TSC22D4	Q9Y3Q8	395 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	MMACHC	Q9Y4U1	282 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	ABCA12	Q86UK0	2595 aa		12.48	□□□□□ -0.41
SREBF1-223	ENST00000584760	DYTN	A2CJ06	578 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	STX16-NPEPL1	H3BU86	382 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	TGFBR3L	H3BV60	316 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	STX16	O14662	325 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	UGDH	O60701	494 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	SCEL	O95171	688 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	SNRPA	P09012	282 aa	Known RBP	12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	RBP1	P09455	135 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	PCNA	P12004	261 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	PRF1	P14222	555 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	PIK3CG	P48736	1102 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	HNRNPF	P52597	415 aa	Known RBP	12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	ARG2	P78540	354 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	TGM3	Q08188	693 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	GTF2H2	Q13888	395 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	TMEM35A	Q53FP2	167 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	LIPJ	Q5W064	366 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	GTF2H2C	Q6P1K8	395 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	ADGRD1	Q6QNK2	874 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	TIFAB	Q6ZNK6	161 aa		12.47	□□□□□ -0.41
SREBF1-223	ENST00000584760	SLC34A3	Q8N130	599 aa		12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms