RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-223	ENST00000582114	TCP1	P17987	556 aa	Known RBP	10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	GNAZ	P19086	355 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	TRHR	P34981	398 aa	Predicted RBP	10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	PTGS2	P35354	604 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	SLC13A2	Q13183	592 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	TMIGD1	Q6UXZ0	262 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	SLCO4C1	Q6ZQN7	724 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	CEP128	Q6ZU80	1094 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	SCUBE1	Q8IWY4	988 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	SNX31	Q8N9S9	440 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	CA5BP1	Q8WTZ4	195 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	RHBDF1	Q96CC6	855 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	LRRC39	Q96DD0	335 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	MS4A6E	Q96DS6	147 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	DMRTA2	Q96SC8	542 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	CSF3R	Q99062	836 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	KCNF1	Q9H3M0	494 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	TRIM45	Q9H8W5	580 aa	Predicted RBP	10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	SMYD2	Q9NRG4	433 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	WWOX	Q9NZC7	414 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	MMACHC	Q9Y4U1	282 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	HRH3	Q9Y5N1	445 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	ADGRG4	Q8IZF6	3080 aa		10.84	□□□□□ -0.67
CDK5RAP3-223	ENST00000582114	USP27X	A6NNY8	438 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	FAM166B	A8MTA8	275 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114		E9PLN8	166 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	KLRC4-KLRK1	H3BQV0	150 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	CLGN	O14967	610 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	TP73	O15350	636 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	B3GALT2	O43825	422 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	PRAMEF4	O60810	478 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	SH3BGRL	O75368	114 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	OR2J2	O76002	312 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	IFNA16	P05015	189 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	TFEB	P19484	476 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	CERS1	P27544	350 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	GMPR	P36959	345 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	SLC6A12	P48065	614 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	HSPA7	P48741	367 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	HNMT	P50135	292 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	SSR4	P51571	173 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	RAB38	P57729	211 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	CDKL1	Q00532	357 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	BMPR2	Q13873	1038 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	TGFBI	Q15582	683 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	CMPK2	Q5EBM0	449 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	XKR6	Q5GH73	641 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	PRAMEF9	Q5VWM5	478 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	IL20RB	Q6UXL0	311 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	SYDE1	Q6ZW31	735 aa	Predicted RBP	10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	VN1R5	Q7Z5H4	357 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	ADAMTSL2	Q86TH1	951 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	ZBED8	Q8IZ13	594 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	KRT78	Q8N1N4	520 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	RPRML	Q8N4K4	120 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	MARVELD2	Q8N4S9	558 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	OR52N2	Q8NGI0	321 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	FAM57A	Q8TBR7	257 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	EXT2	Q93063	718 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	VMP1	Q96GC9	406 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	VPS39	Q96JC1	886 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	QRFPR	Q96P65	431 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	VKORC1	Q9BQB6	163 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	CCDC77	Q9BR77	488 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	TMEM79	Q9BSE2	394 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	REXO4	Q9GZR2	422 aa	Known RBP	10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	DEFB127	Q9H1M4	99 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	CLK4	Q9HAZ1	481 aa	Known RBP	10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	DEPP	Q9NTK1	212 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	ERVK-11	Q9UQG0	969 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	MTO1	Q9Y2Z2	717 aa	Known RBP	10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	SNX24	Q9Y343	169 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	CLDN16	Q9Y5I7	305 aa		10.83	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114		A0A0G2JMM0	328 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114		A0A1W2PPB8	328 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114		A0A1W2PRS3	328 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	PINLYP	A6NC86	204 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	ANKDD1B	A6NHY2	528 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	TMEM200C	A6NKL6	621 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	FAM90A27P	A6NNH2	459 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114		A8MVJ9	347 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	EFCAB8	A8MWE9	144 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	KIR3DP1	A8MWS1	328 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	CXorf49	A8MYA2	514 aa	Predicted RBP	10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	WWP2	O00308	870 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	CLDN4	O14493	209 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	TAPBP	O15533	448 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	PHGDH	O43175	533 aa	Known RBP	10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	OR6B1	O95007	311 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	TBX6	O95947	436 aa	Predicted RBP	10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	CCDC166	P0CW27	439 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	RPL21	P46778	160 aa	Known RBP	10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	SLC12A2	P55011	1212 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	LIM2	P55344	173 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	PLGLB1	Q02325	96 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	ID2	Q02363	134 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	FRG1	Q14331	258 aa	Known RBP	10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	OR4D1	Q15615	310 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	TRIM40	Q6P9F5	258 aa		10.82	□□□□□ -0.68
CDK5RAP3-223	ENST00000582114	MEX3B	Q6ZN04	569 aa	Known RBP	10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms