RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 OR7G3Q8NG95 312 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 ADAMTS18Q8TE60 1221 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 ACTR8Q9H981 624 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 MMP25Q9NPA2 562 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 NECTIN3Q9NQS3 549 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 TMCO1Q9UM00 188 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 MMACHCQ9Y4U1 282 aa22.43■■□□□ 1.18
SHMT1-206ENST00000579558 IGKV3D-11A0A0A0MRZ8 115 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 TCRBV16S1A1N1A0A5B0 115 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 F10P00742 488 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 GCAP28676 217 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 PIK3CGP48736 1102 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 SLC26A5P58743 744 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 DDX39BQ13838 428 aaKnown RBP22.42■■□□□ 1.18
SHMT1-206ENST00000579558 TEX35Q5T0J7 233 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 LIPJQ5W064 366 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 METTL2BQ6P1Q9 378 aaKnown RBP22.42■■□□□ 1.18
SHMT1-206ENST00000579558 FAM47BQ8NA70 645 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 OR1N1Q8NGS0 311 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 HAS2Q92819 552 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 PHF21BQ96EK2 531 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 KCNC2Q96PR1 638 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 TXLNGYQ9BZA5 131 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 ROGDIQ9GZN7 287 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 L2HGDHQ9H9P8 463 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 PRDM7Q9NQW5 492 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 ADGRE2Q9UHX3 823 aa22.42■■□□□ 1.18
SHMT1-206ENST00000579558 HECTD1Q9ULT8 2610 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 TCP11X1B4DZS4 312 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 E2F3O00716 465 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 SMIM24O75264 130 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 SH3BGRLO75368 114 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 WDPCPO95876 746 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 TGFB1P01137 390 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 EEF1DP29692 281 aaKnown RBP22.41■■□□□ 1.18
SHMT1-206ENST00000579558 TMEM35AQ53FP2 167 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 FCRLBQ6BAA4 426 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 H3F3CQ6NXT2 135 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 ADGRD1Q6QNK2 874 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 CHSY3Q70JA7 882 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 UBE3DQ7Z6J8 389 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 MTBPQ96DY7 904 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 CMTM7Q96FZ5 175 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 ZNF354BQ96LW1 612 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 TBCDQ9BTW9 1192 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 RNF32Q9H0A6 362 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP22.41■■□□□ 1.18
SHMT1-206ENST00000579558 IPPKQ9H8X2 491 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 PRTFDC1Q9NRG1 225 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 STMN3Q9NZ72 180 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 DAPP1Q9UN19 280 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 MRPS33Q9Y291 106 aaKnown RBP22.41■■□□□ 1.18
SHMT1-206ENST00000579558 NTNG1Q9Y2I2 539 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 PCDHGA11Q9Y5H2 935 aa22.41■■□□□ 1.18
SHMT1-206ENST00000579558 TRAV17A0A0B4J275 112 aa22.4■■□□□ 1.18
SHMT1-206ENST00000579558 CLDN4O14493 209 aa22.4■■□□□ 1.18
SHMT1-206ENST00000579558 UGDHO60701 494 aa22.4■■□□□ 1.18
SHMT1-206ENST00000579558 TNFSF10P50591 281 aa22.4■■□□□ 1.18
SHMT1-206ENST00000579558 LIM2P55344 173 aa22.4■■□□□ 1.18
SHMT1-206ENST00000579558 RCN2Q14257 317 aa22.4■■□□□ 1.18
SHMT1-206ENST00000579558 SLC29A2Q14542 456 aa22.4■■□□□ 1.18
SHMT1-206ENST00000579558 SCUBE1Q8IWY4 988 aa22.4■■□□□ 1.18
SHMT1-206ENST00000579558 HUS1BQ8NHY5 278 aa22.4■■□□□ 1.18
SHMT1-206ENST00000579558 MRPL57Q9BQC6 102 aaKnown RBP22.4■■□□□ 1.18
SHMT1-206ENST00000579558 MRPL46Q9H2W6 279 aaKnown RBP22.4■■□□□ 1.18
SHMT1-206ENST00000579558 SAGE2PA6NJ88 616 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 A8MUA0 341 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 STX16-NPEPL1H3BU86 382 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 RTCAO00442 366 aaKnown RBP22.39■■□□□ 1.17
SHMT1-206ENST00000579558 STX16O14662 325 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 ARL1P40616 181 aaPredicted RBP22.39■■□□□ 1.17
SHMT1-206ENST00000579558 HNRNPFP52597 415 aaKnown RBP22.39■■□□□ 1.17
SHMT1-206ENST00000579558 HSD17B7P56937 341 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 TAS2R50P59544 299 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 PHEXP78562 749 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 SLC13A2Q13183 592 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 NR6A1Q15406 480 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 AP5B1Q2VPB7 878 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 ACER2Q5QJU3 275 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 KHDRBS2Q5VWX1 349 aaKnown RBP22.39■■□□□ 1.17
SHMT1-206ENST00000579558 ZNF793Q6ZN11 406 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 TIFABQ6ZNK6 161 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 CRLF3Q8IUI8 442 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 ZNF595Q8IYB9 648 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 RNF175Q8N4F7 328 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 SLC5A8Q8N695 610 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 TMEM52Q8NDY8 209 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 REPS1Q96D71 796 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 CSF3RQ99062 836 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 OR51B5Q9H339 312 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 NOL11Q9H8H0 719 aaKnown RBP22.39■■□□□ 1.17
SHMT1-206ENST00000579558 DMRT3Q9NQL9 472 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 AGPAT4Q9NRZ5 378 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 ABI3Q9P2A4 366 aa22.39■■□□□ 1.17
SHMT1-206ENST00000579558 PRRC2CQ9Y520 2896 aaKnown RBP22.39■■□□□ 1.17
SHMT1-206ENST00000579558 RP1L1Q8IWN7 2480 aaPredicted RBP22.38■■□□□ 1.17
SHMT1-206ENST00000579558 OR5H15A6NDH6 313 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 SAP18O00422 153 aaKnown RBP22.38■■□□□ 1.17
SHMT1-206ENST00000579558 ATP5A1P25705 553 aaKnown RBP22.38■■□□□ 1.17
SHMT1-206ENST00000579558 PIK3CBP42338 1070 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms