RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 NHSL2Q5HYW2 709 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 FAM166AQ6J272 317 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 ADCK2Q7Z695 626 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 MED12LQ86YW9 2145 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 ZNF567Q8N184 647 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 ZCCHC10Q8TBK6 192 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 INTS12Q96CB8 462 aaKnown RBP14.79□□□□□ -0.04
VPS53-218ENST00000575207 TM4SF19Q96DZ7 209 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 TM9SF2Q99805 663 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 CHODLQ9H9P2 273 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 NECTIN3Q9NQS3 549 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 PRDM9Q9NQV7 894 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 TAC3Q9UHF0 121 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 RSPH14Q9UHP6 348 aa14.79□□□□□ -0.04
VPS53-218ENST00000575207 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 FRG2CA6NGY1 282 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 ZNF487B1APH4 448 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 TGFBR3LH3BV60 316 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 TNFSF13O75888 250 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 TAS2R40P59535 323 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 ACTG1P63261 375 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 GAB1Q13480 694 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 RCAN2Q14206 197 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 KRT31Q15323 416 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 ADAM5Q6NVV9 412 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 ZNF571Q7Z3V5 609 aaPredicted RBP14.78□□□□□ -0.04
VPS53-218ENST00000575207 KCT2Q8NC54 265 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 MAGEC3Q8TD91 643 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 TFB1MQ8WVM0 346 aaKnown RBP14.78□□□□□ -0.04
VPS53-218ENST00000575207 AKAP1Q92667 903 aaKnown RBP eCLIP14.78□□□□□ -0.04
VPS53-218ENST00000575207 CDKN2AIPNLQ96HQ2 116 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 HS6ST2Q96MM7 605 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 FAM111AQ96PZ2 611 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 CARD6Q9BX69 1037 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 MAK16Q9BXY0 300 aaKnown RBP14.78□□□□□ -0.04
VPS53-218ENST00000575207 KRTAP17-1Q9BYP8 105 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 PHACTR1Q9C0D0 580 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 ISCUQ9H1K1 167 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 HAUS4Q9H6D7 363 aa14.78□□□□□ -0.04
VPS53-218ENST00000575207 EML4Q9HC35 981 aaKnown RBP14.78□□□□□ -0.04
VPS53-218ENST00000575207 NLE1Q9NVX2 485 aaPredicted RBP14.78□□□□□ -0.04
VPS53-218ENST00000575207 FAM157AC9JC47 383 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 C16orf97H3BN30 126 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 CHST10O43529 356 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 OR1I1O60431 355 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 ZNF354AO60765 605 aaPredicted RBP14.77□□□□□ -0.05
VPS53-218ENST00000575207 ZFXP17010 805 aaPredicted RBP14.77□□□□□ -0.05
VPS53-218ENST00000575207 AOAHP28039 575 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 GEMP55040 296 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 KCNJ2P63252 427 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 ABATP80404 500 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 TSTA3Q13630 321 aaPredicted RBP14.77□□□□□ -0.05
VPS53-218ENST00000575207 ERICH6BQ5W0A0 696 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 OPN5Q6U736 354 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 ADGRE4PQ86SQ3 457 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 AFAP1L2Q8N4X5 818 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 CAMKVQ8NCB2 501 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 SEMA6DQ8NFY4 1073 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 LKAAEAR1Q8TD35 194 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 GCDHQ92947 438 aaPredicted RBP14.77□□□□□ -0.05
VPS53-218ENST00000575207 UCN3Q969E3 161 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 VAT1Q99536 393 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 EBNA1BP2Q99848 306 aaKnown RBP14.77□□□□□ -0.05
VPS53-218ENST00000575207 TSSK1BQ9BXA7 367 aa14.77□□□□□ -0.05
VPS53-218ENST00000575207 GDF2Q9UK05 429 aaPredicted RBP14.77□□□□□ -0.05
VPS53-218ENST00000575207 A0A0A6YYJ9 748 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 SLCO1B7G3V0H7 640 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 ANXA9O76027 345 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 VENTXO95231 258 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 GZMKP49863 264 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 HK2P52789 917 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 EIF3BP55884 814 aaKnown RBP14.76□□□□□ -0.05
VPS53-218ENST00000575207 RPS15AP62244 130 aaKnown RBP14.76□□□□□ -0.05
VPS53-218ENST00000575207 TBL3Q12788 808 aaKnown RBP14.76□□□□□ -0.05
VPS53-218ENST00000575207 TMED2Q15363 201 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 SLC22A10Q63ZE4 541 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 ZNF474Q6S9Z5 364 aaPredicted RBP14.76□□□□□ -0.05
VPS53-218ENST00000575207 GSDMBQ8TAX9 411 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 SKA2Q8WVK7 121 aaPredicted RBP14.76□□□□□ -0.05
VPS53-218ENST00000575207 THAP11Q96EK4 314 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 UCN2Q96RP3 112 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 GORASP1Q9BQQ3 440 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 UGT2B28Q9BY64 529 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 PROK2Q9HC23 129 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 ELOVL5Q9NYP7 299 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 RUVBL2Q9Y230 463 aaKnown RBP14.76□□□□□ -0.05
VPS53-218ENST00000575207 MAGED1Q9Y5V3 778 aaPredicted RBP14.76□□□□□ -0.05
VPS53-218ENST00000575207 NINQ8N4C6 2090 aa14.76□□□□□ -0.05
VPS53-218ENST00000575207 SSX4O60224 188 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 KIAA0513O60268 411 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 GALR3O60755 368 aaPredicted RBP14.75□□□□□ -0.05
VPS53-218ENST00000575207 THBDP07204 575 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 SLC25A16P16260 332 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 DSCR9P59020 149 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 DYNLT1P63172 113 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 ARHGAP19Q14CB8 494 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 HERC3Q15034 1050 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 DCST1Q5T197 706 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 MEI1Q5TIA1 1274 aa14.75□□□□□ -0.05
VPS53-218ENST00000575207 HECTD2Q5U5R9 776 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms