RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 CLEC3AO75596 197 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 SLC25A12O75746 678 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 MYO1DO94832 1006 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 HLCSP50747 726 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 TAS2R50P59544 299 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 STXBP1P61764 594 aaKnown RBP16.9■□□□□ 0.3
CHD3-214ENST00000572579 SKP1P63208 163 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 ALDH6A1Q02252 535 aaKnown RBP16.9■□□□□ 0.3
CHD3-214ENST00000572579 ART3Q13508 389 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 CDKL4Q5MAI5 379 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 SULT1C3Q6IMI6 304 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 ISCA2Q86U28 154 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 SPPL2CQ8IUH8 684 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 SLC34A3Q8N130 599 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 FAM47BQ8NA70 645 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 BBOF1Q8ND07 529 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 KIAA1191Q96A73 305 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 F2RL3Q96RI0 385 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 LIN28AQ9H9Z2 209 aaKnown RBP16.9■□□□□ 0.3
CHD3-214ENST00000572579 GPRC5BQ9NZH0 403 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 MMACHCQ9Y4U1 282 aa16.9■□□□□ 0.3
CHD3-214ENST00000572579 PSMD12O00232 456 aaPredicted RBP16.89■□□□□ 0.29
CHD3-214ENST00000572579 ASNA1O43681 348 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 STK16O75716 305 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 GP5P40197 560 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 LIM2P55344 173 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 RAB38P57729 211 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 GUCY2DQ02846 1103 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 E2F2Q14209 437 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 EFTUD2Q15029 972 aaKnown RBP eCLIP16.89■□□□□ 0.29
CHD3-214ENST00000572579 KBTBD12Q3ZCT8 623 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 KRTCAP3Q53RY4 240 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 XKR6Q5GH73 641 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 ZNF793Q6ZN11 406 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 MDGA2Q7Z553 956 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 CLNKQ7Z7G1 428 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 CMC1Q7Z7K0 106 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 PDPRQ8NCN5 879 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 B3GNT7Q8NFL0 401 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 OR2L5Q8NG80 312 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 FBXO25Q8TCJ0 367 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 CCT6BQ92526 530 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 NPLQ9BXD5 320 aaPredicted RBP16.89■□□□□ 0.29
CHD3-214ENST00000572579 REXO4Q9GZR2 422 aaKnown RBP16.89■□□□□ 0.29
CHD3-214ENST00000572579 EHD1Q9H4M9 534 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 PNO1Q9NRX1 252 aaKnown RBP16.89■□□□□ 0.29
CHD3-214ENST00000572579 IGSF5Q9NSI5 407 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 WWOXQ9NZC7 414 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 HRH3Q9Y5N1 445 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 AKAP9Q99996 3911 aa16.89■□□□□ 0.29
CHD3-214ENST00000572579 TRBV11-1A0A0K0K1C0 115 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 HMX2A2RU54 273 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 ADAM10O14672 748 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 HNRNPRO43390 633 aaKnown RBP16.88■□□□□ 0.29
CHD3-214ENST00000572579 SLC35E2BP0CK96 405 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 STMN1P16949 149 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 CERS1P27544 350 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 RFC3P40938 356 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 CYB561P49447 251 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 SLC12A2P55011 1212 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 PLTPP55058 493 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 RAB10P61026 200 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.88■□□□□ 0.293e-6■■■□□ 17.2
CHD3-214ENST00000572579 UBAP2Q5T6F2 1119 aaKnown RBP16.88■□□□□ 0.29
CHD3-214ENST00000572579 SULF2Q8IWU5 870 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 SRRM1Q8IYB3 904 aaKnown RBP16.88■□□□□ 0.29
CHD3-214ENST00000572579 KRT78Q8N1N4 520 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 ZNF321PQ8N8H1 164 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 SNX31Q8N9S9 440 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 TMEM178AQ8NBL3 297 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 TTLQ8NG68 377 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 NCLNQ969V3 563 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 PHF12Q96QT6 1004 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 DEFB126Q9BYW3 111 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 PRTFDC1Q9NRG1 225 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 KLF2Q9Y5W3 355 aaPredicted RBP16.88■□□□□ 0.29
CHD3-214ENST00000572579 DCHS2Q6V1P9 2916 aa16.88■□□□□ 0.29
CHD3-214ENST00000572579 C19orf84I3L1E1 186 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 RTCAO00442 366 aaKnown RBP16.87■□□□□ 0.29
CHD3-214ENST00000572579 MTHFD2P13995 350 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 PTGER1P34995 402 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 CASP2P42575 452 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 HSD17B7P56937 341 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 ATP6V0D1P61421 351 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 CALCOCO2Q13137 446 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 ZNF630Q2M218 657 aaPredicted RBP16.87■□□□□ 0.29
CHD3-214ENST00000572579 DOLPP1Q86YN1 238 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 TCAIMQ8N3R3 496 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 RNF175Q8N4F7 328 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 ZNF808Q8N4W9 903 aaPredicted RBP16.87■□□□□ 0.29
CHD3-214ENST00000572579 PPM1NQ8N819 430 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 FBF1Q8TES7 1133 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 ZNF473Q8WTR7 871 aaKnown RBP16.87■□□□□ 0.29
CHD3-214ENST00000572579 PTPMT1Q8WUK0 201 aaPredicted RBP16.87■□□□□ 0.29
CHD3-214ENST00000572579 SREK1Q8WXA9 508 aaKnown RBP16.87■□□□□ 0.29
CHD3-214ENST00000572579 PTCD3Q96EY7 689 aaKnown RBP16.87■□□□□ 0.29
CHD3-214ENST00000572579 TSPAN17Q96FV3 270 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 SEC16BQ96JE7 1060 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 FAR2Q96K12 515 aa16.87■□□□□ 0.29
CHD3-214ENST00000572579 ATOH8Q96SQ7 321 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms