RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SERPINI1Q99574 410 aa8.78□□□□□ -1
VPS35-211ENST00000569950 MAPKAP1Q9BPZ7 522 aa8.78□□□□□ -1
VPS35-211ENST00000569950 TBCDQ9BTW9 1192 aa8.78□□□□□ -1
VPS35-211ENST00000569950 ILKAPQ9H0C8 392 aaPredicted RBP8.78□□□□□ -1
VPS35-211ENST00000569950 MEAF6Q9HAF1 191 aa8.78□□□□□ -1
VPS35-211ENST00000569950 KCNK13Q9HB14 408 aa8.78□□□□□ -1
VPS35-211ENST00000569950 EML4Q9HC35 981 aaKnown RBP8.78□□□□□ -1
VPS35-211ENST00000569950 THSD1Q9NS62 852 aa8.78□□□□□ -1
VPS35-211ENST00000569950 HCN3Q9P1Z3 774 aa8.78□□□□□ -1
VPS35-211ENST00000569950 VPS29Q9UBQ0 182 aa8.78□□□□□ -1
VPS35-211ENST00000569950 MARCOQ9UEW3 520 aaPredicted RBP8.78□□□□□ -1
VPS35-211ENST00000569950 IL17BQ9UHF5 180 aa8.78□□□□□ -1
VPS35-211ENST00000569950 SLC12A4Q9UP95 1085 aa8.78□□□□□ -1
VPS35-211ENST00000569950 AK5Q9Y6K8 562 aa8.78□□□□□ -1
VPS35-211ENST00000569950 BOD1L1Q8NFC6 3051 aa8.78□□□□□ -1
VPS35-211ENST00000569950 ZFYVE26Q68DK2 2539 aa8.78□□□□□ -1
VPS35-211ENST00000569950 PIEZO2Q9H5I5 2752 aa8.78□□□□□ -1
VPS35-211ENST00000569950 TLN1Q9Y490 2541 aaKnown RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 ATP6AP2A0A1C7CYW4 349 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 WASHC1A8K0Z3 465 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 TCP11X1B4DZS4 312 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 FAM227AF5H4B4 570 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 STMND1H3BQB6 276 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 CHST10O43529 356 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 ATP6AP2O75787 350 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 RSL1D1O76021 490 aaKnown RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 SNUPNO95149 360 aaKnown RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 BMP10O95393 424 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 HBQ1P09105 142 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 ALDOCP09972 364 aaKnown RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 LIPCP11150 499 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 TSFMP43897 325 aaKnown RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 MTTPP55157 894 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 LIM2P55344 173 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 STXBP1P61764 594 aaKnown RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 DCDP81605 110 aaKnown RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 ABHD18Q0P651 414 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 NCF4Q15080 339 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 PDCD2Q16342 344 aaPredicted RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 NKG7Q16617 165 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 SLC9B1Q4ZJI4 515 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 RFTN2Q52LD8 501 aaPredicted RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 VWA2Q5GFL6 755 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 C6orf136Q5SQH8 315 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 TMEM164Q5U3C3 297 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 PRMT9Q6P2P2 845 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 CYB5D1Q6P9G0 228 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 UNQ6494/PRO21346Q6UXR6 183 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 CHSY3Q70JA7 882 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 ABHD13Q7L211 337 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 OVCH1Q7RTY7 1134 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 VASH2Q86V25 355 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 TRIM42Q8IWZ5 723 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 NLGN4XQ8N0W4 816 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 ESX1Q8N693 406 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 ARFGAP2Q8N6H7 521 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 NLGN4YQ8NFZ3 816 aaPredicted RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 PIWIL2Q8TC59 973 aaKnown RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 LRRC8CQ8TDW0 803 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 ADAMTS17Q8TE56 1095 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 SREK1Q8WXA9 508 aaKnown RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 N4BP2L2Q92802 583 aaPredicted RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 FGF11Q92914 225 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 FKBP10Q96AY3 582 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 RGMAQ96B86 450 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 C19orf60Q96EN9 201 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 MMABQ96EY8 250 aaPredicted RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 KCNC2Q96PR1 638 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 OR52B2Q96RD2 323 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 SERINC2Q96SA4 455 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 DPH2Q9BQC3 489 aaPredicted RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 NUF2Q9BZD4 464 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 TGIF2Q9GZN2 237 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 ACTL8Q9H568 366 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 ZNF304Q9HCX3 659 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 TEX10Q9NXF1 929 aaPredicted RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 HEY2Q9UBP5 337 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 CROTQ9UKG9 612 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 DAPP1Q9UN19 280 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 MAP4K5Q9Y4K4 846 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 ATG4BQ9Y4P1 393 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 PCDHGA6Q9Y5G7 932 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 MRPS18BQ9Y676 258 aaKnown RBP8.77□□□□□ -1.01
VPS35-211ENST00000569950 IGSF10Q6WRI0 2623 aa8.77□□□□□ -1.01
VPS35-211ENST00000569950 ATRXP46100 2492 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 IGKV3D-11A0A0A0MRZ8 115 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 A0A1W2PR48 441 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 A0A1W2PS29 197 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 ANKRD28O15084 1053 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 HDAC3O15379 428 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 PROM1O43490 865 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 PRKRAO75569 313 aaKnown RBP8.76□□□□□ -1.01
VPS35-211ENST00000569950 ALBP02768 609 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 LIFP15018 202 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 FBLP22087 321 aaKnown RBP8.76□□□□□ -1.01
VPS35-211ENST00000569950 ALAS2P22557 587 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 TIA1P31483 386 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS35-211ENST00000569950 SOX18P35713 384 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 EIF2S3P41091 472 aaKnown RBP8.76□□□□□ -1.01
VPS35-211ENST00000569950 RPS18P62269 152 aaKnown RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms