RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.03■□□□□ 0.64
CLK3-225ENST00000569063 NFU1Q9UMS0 254 aa19.03■□□□□ 0.64
CLK3-225ENST00000569063 PRRC2CQ9Y520 2896 aaKnown RBP19.02■□□□□ 0.64
CLK3-225ENST00000569063 ANKUB1A6NFN9 424 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 SAGE2PA6NJ88 616 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 KRT38O76015 456 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 F10P00742 488 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 MYBL2P10244 700 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 HSD17B7P56937 341 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 MEP1AQ16819 746 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 TMEM35AQ53FP2 167 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 TECRLQ5HYJ1 363 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 LIPJQ5W064 366 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 GRHL2Q6ISB3 625 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 UBE3DQ7Z6J8 389 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 CRLF3Q8IUI8 442 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 SCUBE1Q8IWY4 988 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 CYP4X1Q8N118 509 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 SLC5A8Q8N695 610 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 ST6GALNAC3Q8NDV1 305 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 OR7G3Q8NG95 312 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 PRR7Q8TB68 274 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 MAGEB10Q96LZ2 347 aaPredicted RBP19.02■□□□□ 0.64
CLK3-225ENST00000569063 NPAS2Q99743 824 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 ADGRE2Q9UHX3 823 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 DAPP1Q9UN19 280 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 TSC22D4Q9Y3Q8 395 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 ANGPTL3Q9Y5C1 460 aa19.02■□□□□ 0.64
CLK3-225ENST00000569063 TNPO3Q9Y5L0 923 aaKnown RBP19.02■□□□□ 0.64
CLK3-225ENST00000569063 POC1B-GALNT4F8VUJ3 575 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 CYR61O00622 381 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 CLDN4O14493 209 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 COL6A2P12110 1019 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 LIM2P55344 173 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 TAS2R50P59544 299 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 FCRLBQ6BAA4 426 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 FAM180AQ6UWF9 173 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 CHSY3Q70JA7 882 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 ZNF595Q8IYB9 648 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 LGI4Q8N135 537 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 BEST3Q8N1M1 668 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 BCORP1Q8N888 145 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 NFAM1Q8NET5 270 aaPredicted RBP19.01■□□□□ 0.63
CLK3-225ENST00000569063 SUN3Q8TAQ9 357 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 TBCDQ9BTW9 1192 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 ROGDIQ9GZN7 287 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 COPS7BQ9H9Q2 264 aaPredicted RBP19.01■□□□□ 0.63
CLK3-225ENST00000569063 ABI3Q9P2A4 366 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 MRPS33Q9Y291 106 aaKnown RBP19.01■□□□□ 0.63
CLK3-225ENST00000569063 CLDN16Q9Y5I7 305 aa19.01■□□□□ 0.63
CLK3-225ENST00000569063 FLNBO75369 2602 aaKnown RBP19■□□□□ 0.63
CLK3-225ENST00000569063 CDK2AP1O14519 115 aa19■□□□□ 0.63
CLK3-225ENST00000569063 UGDHO60701 494 aa19■□□□□ 0.63
CLK3-225ENST00000569063 PRAMEF2O60811 474 aa19■□□□□ 0.63
CLK3-225ENST00000569063 SEMA7AO75326 666 aa19■□□□□ 0.63
CLK3-225ENST00000569063 AGFG2O95081 481 aa19■□□□□ 0.63
CLK3-225ENST00000569063 ABHD2P08910 425 aa19■□□□□ 0.63
CLK3-225ENST00000569063 RBP1P09455 135 aa19■□□□□ 0.63
CLK3-225ENST00000569063 PCNAP12004 261 aa19■□□□□ 0.63
CLK3-225ENST00000569063 EDN3P14138 238 aa19■□□□□ 0.63
CLK3-225ENST00000569063 CERS1P27544 350 aa19■□□□□ 0.63
CLK3-225ENST00000569063 ELOAQ14241 798 aaKnown RBP19■□□□□ 0.63
CLK3-225ENST00000569063 RCN2Q14257 317 aa19■□□□□ 0.63
CLK3-225ENST00000569063 TERF2Q15554 542 aa19■□□□□ 0.63
CLK3-225ENST00000569063 TRMT10CQ7L0Y3 403 aaKnown RBP19■□□□□ 0.63
CLK3-225ENST00000569063 TMEM52Q8NDY8 209 aa19■□□□□ 0.63
CLK3-225ENST00000569063 UHMK1Q8TAS1 419 aaKnown RBP19■□□□□ 0.63
CLK3-225ENST00000569063 CMTM7Q96FZ5 175 aa19■□□□□ 0.63
CLK3-225ENST00000569063 PSMG3-AS1Q96PY0 264 aa19■□□□□ 0.63
CLK3-225ENST00000569063 TAAR6Q96RI8 345 aa19■□□□□ 0.63
CLK3-225ENST00000569063 SLX1AQ9BQ83 275 aa19■□□□□ 0.63
CLK3-225ENST00000569063 LYRM4Q9HD34 91 aa19■□□□□ 0.63
CLK3-225ENST00000569063 PRTFDC1Q9NRG1 225 aa19■□□□□ 0.63
CLK3-225ENST00000569063 ZNF358Q9NW07 568 aa19■□□□□ 0.63
CLK3-225ENST00000569063 KCMF1Q9P0J7 381 aa19■□□□□ 0.63
CLK3-225ENST00000569063 CPSF2Q9P2I0 782 aaKnown RBP19■□□□□ 0.63
CLK3-225ENST00000569063 TMCO1Q9UM00 188 aa19■□□□□ 0.63
CLK3-225ENST00000569063 PCDHGB6Q9Y5F9 930 aa19■□□□□ 0.63
CLK3-225ENST00000569063 LRRC14BA6NHZ5 514 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 H0YIV9 168 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 E2F3O00716 465 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 MAN1A2O60476 641 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 SCELO95171 688 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 TGFB1P01137 390 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 ATP5A1P25705 553 aaKnown RBP18.99■□□□□ 0.63
CLK3-225ENST00000569063 PIK3CBP42338 1070 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 PIK3CGP48736 1102 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 HNRNPFP52597 415 aaKnown RBP18.99■□□□□ 0.63
CLK3-225ENST00000569063 TUBA3CQ13748 450 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 GTF2H2Q13888 395 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 TSNAXIP1Q2TAA8 658 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 KHDRBS2Q5VWX1 349 aaKnown RBP18.99■□□□□ 0.63
CLK3-225ENST00000569063 ZNF324BQ6AW86 544 aaPredicted RBP18.99■□□□□ 0.63
CLK3-225ENST00000569063 GTF2H2CQ6P1K8 395 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 TUBA3EQ6PEY2 450 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 GOLGA7Q7Z5G4 137 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 KIF2BQ8N4N8 673 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 FAM47BQ8NA70 645 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 HUS1BQ8NHY5 278 aa18.99■□□□□ 0.63
CLK3-225ENST00000569063 IPPKQ9H8X2 491 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms