RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	MYOT	Q9UBF9	498 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	TCAF1	Q9Y4C2	921 aa		10.85	□□□□□ -0.67
CLK3-222	ENST00000568232	SON	P18583	2426 aa	Known RBP	10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	SH3D21	A4FU49	640 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	NDUFS4	O43181	175 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	PSMD3	O43242	534 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	GAS8	O95995	478 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	IFNA2	P01563	188 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	IL2RA	P01589	272 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	SERPIND1	P05546	499 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	ZNF888	P0CJ79	500 aa	Predicted RBP	10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	ALOX12	P18054	663 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	HRH2	P25021	359 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	IMPA1	P29218	277 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	TIMP3	P35625	211 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	NR1H2	P55055	460 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	UBASH3A	P57075	661 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	TBPL1	P62380	186 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	LAPTM4A	Q15012	233 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	TCEAL1	Q15170	157 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	RPS6KA1	Q15418	735 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	P3H1	Q32P28	736 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	HECTD2	Q5U5R9	776 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	RTL4	Q6ZR62	310 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	MFSD9	Q8NBP5	474 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	UBTD1	Q9HAC8	227 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	SACM1L	Q9NTJ5	587 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	JKAMP	Q9P055	326 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	SAMD15	Q9P1V8	674 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	PPIE	Q9UNP9	301 aa	Known RBP	10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	ATG4B	Q9Y4P1	393 aa		10.84	□□□□□ -0.67
CLK3-222	ENST00000568232	KIAA1549	Q9HCM3	1950 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	GOLGA8K	D6RF30	607 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	GOLGA8T	H3BQL2	631 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	TGFBR3L	H3BV60	316 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	SIAH2	O43255	324 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	CEP104	O60308	925 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232		P04436	131 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	CDH1	P12830	882 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	HNF4A	P41235	474 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	CRADD	P78560	199 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	CAPRIN1	Q14444	709 aa	Known RBP	10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	SIX1	Q15475	284 aa	Predicted RBP	10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	ACKR1	Q16570	336 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	PPP1R21	Q6ZMI0	780 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	LACC1	Q8IV20	430 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	OTUD6B	Q8N6M0	293 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	NEIL3	Q8TAT5	605 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	ALKBH8	Q96BT7	664 aa	Known RBP	10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	SECISBP2	Q96T21	854 aa	Known RBP	10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	CCDC177	Q9NQR7	707 aa	Predicted RBP	10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	ADGRE2	Q9UHX3	823 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	TFR2	Q9UP52	801 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	EIF3L	Q9Y262	564 aa	Known RBP	10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	CRYL1	Q9Y2S2	319 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	PCDHGB3	Q9Y5G1	929 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	ARHGAP21	Q5T5U3	1957 aa		10.83	□□□□□ -0.68
CLK3-222	ENST00000568232	MYOCOS	A0A1B0GUC4	107 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	CTAGE15	A4D2H0	777 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	AHRR	A9YTQ3	701 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	PSMD12	O00232	456 aa	Predicted RBP	10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	CASK	O14936	926 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	OR1F1	O43749	312 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	CTSS	P25774	331 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	SKIV2L2	P42285	1042 aa	Known RBP	10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	PTH2R	P49190	550 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	HK2	P52789	917 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	RAB8A	P61006	207 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	DMTN	Q08495	405 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	CUL1	Q13616	776 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	IQCB1	Q15051	598 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	TERF2	Q15554	542 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	HEPHL1	Q6MZM0	1159 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	ABHD13	Q7L211	337 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	LUZP2	Q86TE4	346 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	CTAGE6	Q86UF2	777 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	ZNF321P	Q8N8H1	164 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	PRELID2	Q8N945	189 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	UTP15	Q8TED0	518 aa	Known RBP	10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	ASB11	Q8WXH4	323 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	LPGAT1	Q92604	370 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	ISL2	Q96A47	359 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	IQCD	Q96DY2	449 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	PANX2	Q96RD6	677 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	DNAJC7	Q99615	494 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	RBM24	Q9BX46	236 aa	Known RBP	10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	ZNF703	Q9H7S9	590 aa	Predicted RBP	10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	ETNK1	Q9HBU6	452 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	GALNT8	Q9NY28	637 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	EFR3B	Q9Y2G0	817 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	CLDN16	Q9Y5I7	305 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232	ARID1A	O14497	2285 aa		10.82	□□□□□ -0.68
CLK3-222	ENST00000568232		A0A087X1B8	175 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	C15orf38-AP3S2	A0A0A6YYH1	394 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	GFY	I3L273	518 aa		10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	F7	P08709	466 aa	Predicted RBP	10.81	□□□□□ -0.68
CLK3-222	ENST00000568232	RNH1	P13489	461 aa	Known RBP	10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 34 ms