RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 FANCEQ9HB96 536 aa19.34■□□□□ 0.69
CLN3-230ENST00000568076 MSRAQ9UJ68 235 aa19.34■□□□□ 0.69
CLN3-230ENST00000568076 HEMK1Q9Y5R4 338 aaPredicted RBP19.34■□□□□ 0.69
CLN3-230ENST00000568076 PRAMEF33A0A0G2JMD5 474 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 PRAMEF25A6NGN4 478 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 OR52A4PA6NMU1 304 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 SLC1A7O00341 560 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 SCAMP1O15126 338 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 OR1F1O43749 312 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 TMPRSS11DO60235 418 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 JRKO75564 520 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 COL9A1P20849 921 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 DCKP27707 260 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 NTSR1P30989 418 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 ADPRHP54922 357 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 GPR107Q5VW38 600 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 TRIM40Q6P9F5 258 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 OR2A1Q8NGT9 310 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 CNIH3Q8TBE1 160 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 NAA50Q9GZZ1 169 aaKnown RBP19.33■□□□□ 0.69
CLN3-230ENST00000568076 NDUFAF4Q9P032 175 aa19.33■□□□□ 0.69
CLN3-230ENST00000568076 A0A1W2PQF6 199 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 CAPN5O15484 640 aaPredicted RBP19.33■□□□□ 0.68
CLN3-230ENST00000568076 UGT2B11O75310 529 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 EPHA2P29317 976 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 TTKP33981 857 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 PRIM2P49643 509 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 RAB28P51157 221 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 PRDX1Q06830 199 aaKnown RBP19.33■□□□□ 0.68
CLN3-230ENST00000568076 PIGFQ07326 219 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 CDK5R2Q13319 367 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 FAHD1Q6P587 224 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 CCDC80Q76M96 950 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 FAM124AQ86V42 546 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 FAM20CQ8IXL6 584 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 SPARTQ8N0X7 666 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 AMER3Q8N944 861 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 IL17RCQ8NAC3 791 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 OR13F1Q8NGS4 319 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 SPPL2AQ8TCT8 520 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 EPYCQ99645 322 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 DOK1Q99704 481 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 TUBA1CQ9BQE3 449 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 PITHD1Q9GZP4 211 aaPredicted RBP19.33■□□□□ 0.68
CLN3-230ENST00000568076 AICDAQ9GZX7 198 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 PAK1IP1Q9NWT1 392 aaPredicted RBP19.33■□□□□ 0.68
CLN3-230ENST00000568076 C5AR2Q9P296 337 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 MOSPD1Q9UJG1 213 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 TICRRQ7Z2Z1 1910 aa19.33■□□□□ 0.68
CLN3-230ENST00000568076 SPTBN5Q9NRC6 3674 aaKnown RBP19.32■□□□□ 0.68
CLN3-230ENST00000568076 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.32■□□□□ 0.68
CLN3-230ENST00000568076 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.32■□□□□ 0.68
CLN3-230ENST00000568076 M0QX08 132 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 PPM1DO15297 605 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 NDUFS4O43181 175 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 C9P02748 559 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 UQCRC2P22695 453 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 PKLRP30613 574 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 SERPINB1P30740 379 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 RRM2P31350 389 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 ALDH9A1P49189 494 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 GABARAPL2P60520 117 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 CDK6Q00534 326 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 PAGE2Q7Z2X7 111 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 ZC3H7AQ8IWR0 971 aaKnown RBP19.32■□□□□ 0.68
CLN3-230ENST00000568076 APOOQ9BUR5 198 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 TMEM184CQ9NVA4 438 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 GPSM3Q9Y4H4 160 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 MYO9BQ13459 2157 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 TBX19O60806 448 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 ATE1O95260 518 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 DNTTP04053 509 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 ARAFP10398 606 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 MATN1P21941 496 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 OR1E2P47887 323 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 PPP2CBP62714 309 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 PPP2CAP67775 309 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 IL5RAQ01344 420 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 ADAM15Q13444 863 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 KEAP1Q14145 624 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 LAIR1Q6GTX8 287 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 ADCK2Q7Z695 626 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 RAB42Q8N4Z0 105 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 ATG16L2Q8NAA4 619 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 ZNF420Q8TAQ5 688 aaPredicted RBP19.32■□□□□ 0.68
CLN3-230ENST00000568076 UCN3Q969E3 161 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 RMI1Q9H9A7 625 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 PRDM8Q9NQV8 689 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 AASSQ9UDR5 926 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 SNX8Q9Y5X2 465 aa19.32■□□□□ 0.68
CLN3-230ENST00000568076 TBC1D3DA0A087WVF3 549 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 TBC1D3IA0A087WXS9 549 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 TBC1D3EA0A087X179 549 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 TBC1D3KA0A087X1G2 549 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 TBC1D3FA6NER0 549 aaPredicted RBP19.31■□□□□ 0.68
CLN3-230ENST00000568076 TBC1D3LB9A6J9 549 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 H3BMQ9 156 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 TMX2-CTNND1H3BSU7 103 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 KRT75O95678 551 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 TBC1D3HP0C7X1 549 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms