RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SRSF11Q05519 484 aaKnown RBP13.91□□□□□ -0.18
CLN3-213ENST00000565047 ELOAQ14241 798 aaKnown RBP13.91□□□□□ -0.18
CLN3-213ENST00000565047 SLMAPQ14BN4 828 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 WHAMMP3Q1A5X7 153 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 ZNF766Q5HY98 468 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 MROH9Q5TGP6 573 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 C8orf74Q6P047 294 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 ZNF793Q6ZN11 406 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 SLC5A8Q8N695 610 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 SNX31Q8N9S9 440 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 ZNF473Q8WTR7 871 aaKnown RBP13.91□□□□□ -0.18
CLN3-213ENST00000565047 KCTD4Q8WVF5 259 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 C5orf34Q96MH7 638 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 F2RL3Q96RI0 385 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 CDCP1Q9H5V8 836 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 ANKRD10Q9NXR5 420 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 ACOT9Q9Y305 439 aa13.91□□□□□ -0.18
CLN3-213ENST00000565047 CCDC189A1A4V9 331 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 ANKDD1BA6NHY2 528 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 TMEM200CA6NKL6 621 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 GABRR3A8MPY1 467 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 K7EPI3 171 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 CCNT2O60583 730 aaKnown RBP13.9□□□□□ -0.18
CLN3-213ENST00000565047 URI1O94763 535 aaPredicted RBP13.9□□□□□ -0.18
CLN3-213ENST00000565047 TPP2P29144 1249 aaPredicted RBP13.9□□□□□ -0.18
CLN3-213ENST00000565047 PPP2R1BP30154 601 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 TRHRP34981 398 aaPredicted RBP13.9□□□□□ -0.18
CLN3-213ENST00000565047 MAGEA12P43365 314 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 HSD17B7P56937 341 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 KCNK10P57789 538 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 PMP22Q01453 160 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 CHIT1Q13231 466 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 LAPTM5Q13571 262 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 BMPR2Q13873 1038 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 TERF2Q15554 542 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 OR1C1Q15619 314 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 RAPH1Q70E73 1250 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 CCDC91Q7Z6B0 441 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 TBC1D1Q86TI0 1168 aaPredicted RBP13.9□□□□□ -0.18
CLN3-213ENST00000565047 RPS19BP1Q86WX3 136 aaKnown RBP13.9□□□□□ -0.18
CLN3-213ENST00000565047 RELTQ969Z4 430 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 ISL2Q96A47 359 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 MAGEB10Q96LZ2 347 aaPredicted RBP13.9□□□□□ -0.18
CLN3-213ENST00000565047 SERINC2Q96SA4 455 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 CSF3RQ99062 836 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 MS4A8Q9BY19 250 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 ACSS3Q9H6R3 686 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 SNX15Q9NRS6 342 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 DAPP1Q9UN19 280 aa13.9□□□□□ -0.18
CLN3-213ENST00000565047 A0A087X1B8 175 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 A1L4Q6 167 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 PSMD12O00232 456 aaPredicted RBP13.89□□□□□ -0.19
CLN3-213ENST00000565047 SCELO95171 688 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 CERS1P27544 350 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 MTTPP55157 894 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 IRF8Q02556 426 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 NAA30Q147X3 362 aaPredicted RBP13.89□□□□□ -0.19
CLN3-213ENST00000565047 SETDB1Q15047 1291 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 ACAP2Q15057 778 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 MAMDC2Q7Z304 686 aaPredicted RBP13.89□□□□□ -0.19
CLN3-213ENST00000565047 ZGRF1Q86YA3 2104 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 SIAH3Q8IW03 269 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 ZNF595Q8IYB9 648 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 PLD6Q8N2A8 252 aaKnown RBP13.89□□□□□ -0.19
CLN3-213ENST00000565047 B3GNT7Q8NFL0 401 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 OR7G3Q8NG95 312 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 SUN3Q8TAQ9 357 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 SLC44A1Q8WWI5 657 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 EXT2Q93063 718 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 FAR2Q96K12 515 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 UTP23Q9BRU9 249 aaKnown RBP13.89□□□□□ -0.19
CLN3-213ENST00000565047 TSC22D4Q9Y3Q8 395 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 CROCCQ5TZA2 2017 aa13.89□□□□□ -0.19
CLN3-213ENST00000565047 A0A096LPK6 155 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 LRRC14BA6NHZ5 514 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 A8MUA0 341 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 B3GALT2O43825 422 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 PRKNO60260 465 aaPredicted RBP13.88□□□□□ -0.19
CLN3-213ENST00000565047 CTNSO60931 367 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 KLHL2O95198 593 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 CRYABP02511 175 aaKnown RBP13.88□□□□□ -0.19
CLN3-213ENST00000565047 SP1P08047 785 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 ATP5A1P25705 553 aaKnown RBP13.88□□□□□ -0.19
CLN3-213ENST00000565047 COL8A1P27658 744 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 PAGE2BQ5JRK9 111 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 GRHL2Q6ISB3 625 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 TRIM40Q6P9F5 258 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 CHERPQ8IWX8 916 aaKnown RBP13.88□□□□□ -0.19
CLN3-213ENST00000565047 CYP4X1Q8N118 509 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 RNF175Q8N4F7 328 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 FAM47BQ8NA70 645 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 ADAMTS18Q8TE60 1221 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 CCT6BQ92526 530 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 FRMD6Q96NE9 622 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 KCNC2Q96PR1 638 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 CDC42EP4Q9H3Q1 356 aaKnown RBP13.88□□□□□ -0.19
CLN3-213ENST00000565047 LYRM4Q9HD34 91 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 PRTFDC1Q9NRG1 225 aa13.88□□□□□ -0.19
CLN3-213ENST00000565047 SVILO95425 2214 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 SUPT3HB4E1H0 165 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms