RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 CD22P20273 847 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 IL10P22301 178 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 TSFMP43897 325 aaKnown RBP12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 AP2B1P63010 937 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 RUNX2Q13950 521 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 NAA30Q147X3 362 aaPredicted RBP12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 TECRLQ5HYJ1 363 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 PLAG1Q6DJT9 500 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 NIPAL1Q6NVV3 410 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 KLC3Q6P597 504 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 FAM180AQ6UWF9 173 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 LRRC70Q7Z2Q7 622 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 VN1R5Q7Z5H4 357 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 MYLK4Q86YV6 388 aaPredicted RBP12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 CRLF3Q8IUI8 442 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 BEST3Q8N1M1 668 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 KIF2BQ8N4N8 673 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 MREGQ8N565 214 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 FAM47BQ8NA70 645 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 TTLQ8NG68 377 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 GAL3ST3Q96A11 431 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 MS4A6EQ96DS6 147 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 PTCD3Q96EY7 689 aaKnown RBP12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 F2RL3Q96RI0 385 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 REXO4Q9GZR2 422 aaKnown RBP12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 COPS7BQ9H9Q2 264 aaPredicted RBP12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 NECTIN3Q9NQS3 549 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 ZNF358Q9NW07 568 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 CPSF2Q9P2I0 782 aaKnown RBP12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 OPTCQ9UBM4 332 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 TEKT2Q9UIF3 430 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 ZNF490Q9ULM2 529 aaPredicted RBP12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 ANGPTL3Q9Y5C1 460 aa12.8□□□□□ -0.36
VPS9D1-204ENST00000565023 TRAV17A0A0B4J275 112 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 CLEC18AA5D8T8 446 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 LRIT2A6NDA9 550 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 OR5H15A6NDH6 313 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 LRRC14BA6NHZ5 514 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 SYCE1LA8MT33 242 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 B3GALT2O43825 422 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 KLK8O60259 260 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 MAN1A2O60476 641 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 CLEC3AO75596 197 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 CYC1P08574 325 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 RBP1P09455 135 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 EPORP19235 508 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 CERS1P27544 350 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 TNFSF10P50591 281 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 SLC26A5P58743 744 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 DDX39BQ13838 428 aaKnown RBP12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 EXT1Q16394 746 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 HIST2H2ACQ16777 129 aaPredicted RBP12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 PFKFB4Q16877 469 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 TSNAXIP1Q2TAA8 658 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 HIST2H2AA3Q6FI13 130 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 TRIM40Q6P9F5 258 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 CLEC18BQ6UXF7 455 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 CLNKQ7Z7G1 428 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 RNF175Q8N4F7 328 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 TEX9Q8N6V9 391 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 CLEC18CQ8NCF0 446 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 SUN3Q8TAQ9 357 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 ACMSDQ8TDX5 336 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 SREK1Q8WXA9 508 aaKnown RBP12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 ZNF354BQ96LW1 612 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 EFCAB11Q9BUY7 163 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 NT5DC2Q9H857 520 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 PRTFDC1Q9NRG1 225 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 PNO1Q9NRX1 252 aaKnown RBP12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 TBK1Q9UHD2 729 aa12.79□□□□□ -0.36
VPS9D1-204ENST00000565023 A1L4Q6 167 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 K7EPI3 171 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 SAP18O00422 153 aaKnown RBP12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 RTCAO00442 366 aaKnown RBP12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 CDH16O75309 829 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 TGFB1P01137 390 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 RNF224P0DH78 156 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 ARL1P40616 181 aaPredicted RBP12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 SLCO1A2P46721 670 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 HNRNPFP52597 415 aaKnown RBP12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 TAS2R50P59544 299 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 PMP22Q01453 160 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 OC90Q02509 493 aaPredicted RBP12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 LAPTM5Q13571 262 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 PAGE2BQ5JRK9 111 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 ACER2Q5QJU3 275 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 QSOX2Q6ZRP7 698 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 LCA5Q86VQ0 697 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 TMEM52Q8NDY8 209 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 ARMC2Q8NEN0 867 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 OR2L5Q8NG80 312 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 M1APQ8TC57 530 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 EPS8L3Q8TE67 593 aaKnown RBP12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 UBTD2Q8WUN7 234 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 FAR1Q8WVX9 515 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 HAS2Q92819 552 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 SCYL1Q96KG9 808 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 CDCP1Q9H5V8 836 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 PRDM9Q9NQV7 894 aa12.78□□□□□ -0.36
VPS9D1-204ENST00000565023 KLHL1Q9NR64 748 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms