RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 EPB41L4BQ9H329 900 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 PSD3Q9NYI0 1048 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 DCDC2Q9UHG0 476 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 SHANK1Q9Y566 2161 aa12.6□□□□□ -0.39
CLK3-213ENST00000563842 A0A0G2JN53 185 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 DYTNA2CJ06 578 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 BLACEA4D250 179 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 C4orf51C9J302 202 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 SEC24DO94855 1032 aaPredicted RBP12.59□□□□□ -0.39
CLK3-213ENST00000563842 SORBS2O94875 1100 aaKnown RBP12.59□□□□□ -0.39
CLK3-213ENST00000563842 SIX3O95343 332 aaPredicted RBP12.59□□□□□ -0.39
CLK3-213ENST00000563842 TGFB1P01137 390 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 MYBL2P10244 700 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 PTX3P26022 381 aaPredicted RBP12.59□□□□□ -0.39
CLK3-213ENST00000563842 EFNA3P52797 238 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 HSD17B7P56937 341 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 KCNC4Q03721 635 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 RUNX2Q13950 521 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 DEPDC1Q5TB30 811 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 KHDRBS2Q5VWX1 349 aaKnown RBP12.59□□□□□ -0.39
CLK3-213ENST00000563842 PAPD4Q6PIY7 484 aaKnown RBP12.59□□□□□ -0.39
CLK3-213ENST00000563842 Q6ZS92 163 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 ATCAYQ86WG3 371 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 TDRPQ86YL5 185 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 ZNF595Q8IYB9 648 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 BRIX1Q8TDN6 353 aaKnown RBP12.59□□□□□ -0.39
CLK3-213ENST00000563842 RGMAQ96B86 450 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 NTMT1Q9BV86 223 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 NOL11Q9H8H0 719 aaKnown RBP12.59□□□□□ -0.39
CLK3-213ENST00000563842 ANKZF1Q9H8Y5 726 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 LYRM4Q9HD34 91 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 PRDM7Q9NQW5 492 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 PTGFRNQ9P2B2 879 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 TBK1Q9UHD2 729 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 CROCCQ5TZA2 2017 aa12.59□□□□□ -0.39
CLK3-213ENST00000563842 SVILO95425 2214 aa12.58□□□□□ -0.39
CLK3-213ENST00000563842 IGHV3-20A0A0C4DH32 117 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 OR2W5A6NFC9 320 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 LRRC14BA6NHZ5 514 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 ESPNB1AK53 854 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 DNAJB6O75190 326 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 TBX6O95947 436 aaPredicted RBP12.58□□□□□ -0.4
CLK3-213ENST00000563842 KRT15P19012 456 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 SOX11P35716 441 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 SSR2P43308 183 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 RAP1GDS1P52306 607 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 MLLT10P55197 1068 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 LIM2P55344 173 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 TAS2R50P59544 299 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 FOXK1P85037 733 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 DDX39BQ13838 428 aaKnown RBP12.58□□□□□ -0.4
CLK3-213ENST00000563842 RASA2Q15283 850 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 TLR1Q15399 786 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 CPSF6Q16630 551 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLK3-213ENST00000563842 PLEKHN1Q494U1 663 aaPredicted RBP12.58□□□□□ -0.4
CLK3-213ENST00000563842 COLEC12Q5KU26 742 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 ABHD17BQ5VST6 288 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 ADNP2Q6IQ32 1131 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 LINC00696Q6ZRV3 163 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 SLC22A9Q8IVM8 553 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 CYP4X1Q8N118 509 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 HUS1BQ8NHY5 278 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 DNAJB14Q8TBM8 379 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 CPT1CQ8TCG5 803 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 TSLPQ969D9 159 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 ZNF354BQ96LW1 612 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 C1QTNF3Q9BXJ4 246 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 KCNK13Q9HB14 408 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 MMP25Q9NPA2 562 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 PRTFDC1Q9NRG1 225 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 MS4A12Q9NXJ0 267 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 ABI3Q9P2A4 366 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 PCTPQ9UKL6 214 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 PPT2Q9UMR5 302 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 DAPP1Q9UN19 280 aa12.58□□□□□ -0.4
CLK3-213ENST00000563842 PRRC2CQ9Y520 2896 aaKnown RBP12.57□□□□□ -0.4
CLK3-213ENST00000563842 TCRBV16S1A1N1A0A5B0 115 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 A8MT66 165 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 FAM227AF5H4B4 570 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 FOXE1O00358 373 aaPredicted RBP12.57□□□□□ -0.4
CLK3-213ENST00000563842 CDK2AP1O14519 115 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 CDH16O75309 829 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 GLRA3O75311 464 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 OTCP00480 354 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 RPS17P08708 135 aaKnown RBP12.57□□□□□ -0.4
CLK3-213ENST00000563842 ITGAMP11215 1152 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 PYGBP11216 843 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 HIST1H1TP22492 207 aaPredicted RBP12.57□□□□□ -0.4
CLK3-213ENST00000563842 ATP5F1P24539 256 aaPredicted RBP12.57□□□□□ -0.4
CLK3-213ENST00000563842 ATP5A1P25705 553 aaKnown RBP12.57□□□□□ -0.4
CLK3-213ENST00000563842 CERS1P27544 350 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 SLC26A5P58743 744 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 ARG2P78540 354 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 BTG2P78543 158 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 IFT88Q13099 833 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 SLC13A2Q13183 592 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 CUL3Q13618 768 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 ZRSR2Q15696 482 aaKnown RBP12.57□□□□□ -0.4
CLK3-213ENST00000563842 B3GNTL1Q67FW5 361 aaPredicted RBP12.57□□□□□ -0.4
CLK3-213ENST00000563842 TTC19Q6DKK2 380 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms