RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 PRDM9Q9NQV7 894 aa9.59□□□□□ -0.87
SF3B3-204ENST00000563739 EIF2B3Q9NR50 452 aaKnown RBP9.59□□□□□ -0.87
SF3B3-204ENST00000563739 TUBA8Q9NY65 449 aaPredicted RBP9.59□□□□□ -0.87
SF3B3-204ENST00000563739 UTP6Q9NYH9 597 aaKnown RBP9.59□□□□□ -0.87
SF3B3-204ENST00000563739 ANAPC5Q9UJX4 755 aa9.59□□□□□ -0.87
SF3B3-204ENST00000563739 SOX13Q9UN79 622 aa9.59□□□□□ -0.87
SF3B3-204ENST00000563739 ZKSCAN5Q9Y2L8 839 aa9.59□□□□□ -0.87
SF3B3-204ENST00000563739 CHD3Q12873 2000 aaKnown RBP9.59□□□□□ -0.87
SF3B3-204ENST00000563739 FIGNL2A6NMB9 653 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 ZNF839A8K0R7 811 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 INAFM1C9JVW0 142 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 H3BMM5 538 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 NDUFS4O43181 175 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 SIAH2O43255 324 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 WDR1O75083 606 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 MYO1DO94832 1006 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 FTCDO95954 541 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 IFNB1P01574 187 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 CHRM3P20309 590 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 HRH2P25021 359 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 PCSK6P29122 969 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 ADSLP30566 484 aaPredicted RBP9.58□□□□□ -0.88
SF3B3-204ENST00000563739 SCTRP47872 440 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 ASCL1P50553 236 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 SSR4P51571 173 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 CLCN2P51788 898 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 ZNF136P52737 540 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 HK2P52789 917 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 HERC3Q15034 1050 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 TERF2Q15554 542 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 CATSPEREQ5SY80 951 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 THEMIS2Q5TEJ8 643 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 AGTRAPQ6RW13 159 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 LCTLQ6UWM7 567 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 LYPD8Q6UX82 237 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 IL20RBQ6UXL0 311 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 UBE2R2Q712K3 238 aaPredicted RBP9.58□□□□□ -0.88
SF3B3-204ENST00000563739 VWA5B2Q8N398 1253 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 TXLNBQ8N3L3 684 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 MYRIPQ8NFW9 859 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 TNIP2Q8NFZ5 429 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 CREB3L4Q8TEY5 395 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 NUDT8Q8WV74 236 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 C1orf54Q8WWF1 131 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 RNASE6Q93091 150 aaKnown RBP9.58□□□□□ -0.88
SF3B3-204ENST00000563739 KIAA1191Q96A73 305 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 HES6Q96HZ4 224 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 CALR3Q96L12 384 aaKnown RBP9.58□□□□□ -0.88
SF3B3-204ENST00000563739 TCF12Q99081 682 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 GPR21Q99679 349 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 WDR83Q9BRX9 315 aaKnown RBP9.58□□□□□ -0.88
SF3B3-204ENST00000563739 ZNF703Q9H7S9 590 aaPredicted RBP9.58□□□□□ -0.88
SF3B3-204ENST00000563739 TIMMDC1Q9NPL8 285 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 FBXO6Q9NRD1 293 aaPredicted RBP9.58□□□□□ -0.88
SF3B3-204ENST00000563739 KLHL42Q9P2K6 505 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 FBXW2Q9UKT8 454 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 IKZF3Q9UKT9 509 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 DHRS7Q9Y394 339 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 ATG4BQ9Y4P1 393 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 NINQ8N4C6 2090 aa9.58□□□□□ -0.88
SF3B3-204ENST00000563739 CR1P17927 2039 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 ZCWPW2A0A1B0GU75 182 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 TRBC2A0A5B9 178 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 H7C1Q1 480 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 NRDCO43847 1150 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 SUSD5O60279 629 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 SLC35G6P0C7Q6 338 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 JAK1P23458 1154 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 UQCRC1P31930 480 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 PGGT1BP53609 377 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 RAB8AP61006 207 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 REEP5Q00765 189 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 DHX9Q08211 1270 aaKnown RBP9.57□□□□□ -0.88
SF3B3-204ENST00000563739 KIF5AQ12840 1032 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 CTBP1Q13363 440 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 NAE1Q13564 534 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 PWP1Q13610 501 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 RUNX2Q13950 521 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 RNF187Q5TA31 235 aaPredicted RBP9.57□□□□□ -0.88
SF3B3-204ENST00000563739 TAOK1Q7L7X3 1001 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 C17orf64Q86WR6 236 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 TMEM156Q8N614 296 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 KCNJ9Q92806 393 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 PYCR2Q96C36 320 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 VMP1Q96GC9 406 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 CSF3RQ99062 836 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 IL22Q9GZX6 179 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 SLC6A15Q9H2J7 730 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 IL1RL2Q9HB29 575 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 JKAMPQ9P055 326 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 DRG1Q9Y295 367 aaKnown RBP9.57□□□□□ -0.88
SF3B3-204ENST00000563739 YARS2Q9Y2Z4 477 aaKnown RBP9.57□□□□□ -0.88
SF3B3-204ENST00000563739 BOLA1Q9Y3E2 137 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.57□□□□□ -0.88
SF3B3-204ENST00000563739 CAPN6Q9Y6Q1 641 aa9.57□□□□□ -0.88
SF3B3-204ENST00000563739 MED12LQ86YW9 2145 aa9.56□□□□□ -0.88
SF3B3-204ENST00000563739 MYOCOSA0A1B0GUC4 107 aa9.56□□□□□ -0.88
SF3B3-204ENST00000563739 A8MVJ9 347 aa9.56□□□□□ -0.88
SF3B3-204ENST00000563739 WWP2O00308 870 aa9.56□□□□□ -0.88
SF3B3-204ENST00000563739 AVILO75366 819 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms