RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TRPV2Q9Y5S1 764 aa2.99□□□□□ -1.93
VPS13C-208ENST00000559119 CLIP1P30622 1438 aa2.99□□□□□ -1.93
VPS13C-208ENST00000559119 BAZ1BQ9UIG0 1483 aaKnown RBP2.98□□□□□ -1.93
VPS13C-208ENST00000559119 IGKV6-21A0A0C4DH24 114 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 FOXI3A8MTJ6 420 aaPredicted RBP2.98□□□□□ -1.93
VPS13C-208ENST00000559119 LRRTM2O43300 516 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 TADA2AO75478 443 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 LUC7L3O95232 432 aaKnown RBP2.98□□□□□ -1.93
VPS13C-208ENST00000559119 LYPD3O95274 346 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 ANGPTL1O95841 491 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 PENKP01210 267 aaPredicted RBP2.98□□□□□ -1.93
VPS13C-208ENST00000559119 SLC1A6P48664 564 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 RBBP4Q09028 425 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 RALBP1Q15311 655 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 PCK2Q16822 640 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 ZNF542PQ5EBM4 170 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 BMP2KLQ5H9B9 411 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 LIPJQ5W064 366 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 RFWD3Q6PCD5 774 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 C15orf52Q6ZUT6 534 aaKnown RBP2.98□□□□□ -1.93
VPS13C-208ENST00000559119 NUFIP2Q7Z417 695 aaKnown RBP2.98□□□□□ -1.93
VPS13C-208ENST00000559119 TBC1D10CQ8IV04 446 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 MFN1Q8IWA4 741 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 BEST4Q8NFU0 473 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 GRK7Q8WTQ7 553 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 P2RX5Q93086 422 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 ZBED6CLQ96FA7 236 aaPredicted RBP2.98□□□□□ -1.93
VPS13C-208ENST00000559119 ZBP1Q9H171 429 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 UBQLN2Q9UHD9 624 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 ISY1Q9ULR0 285 aaKnown RBP2.98□□□□□ -1.93
VPS13C-208ENST00000559119 HBS1LQ9Y450 684 aaKnown RBP2.98□□□□□ -1.93
VPS13C-208ENST00000559119 SNX8Q9Y5X2 465 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 MAPKBP1O60336 1514 aa2.98□□□□□ -1.93
VPS13C-208ENST00000559119 KIF21BO75037 1637 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 PEG3Q9GZU2 1588 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 TRAV18A0A075B6X5 111 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 A0A0U1RQG5 324 aaPredicted RBP2.97□□□□□ -1.93
VPS13C-208ENST00000559119 TRBC2A0A5B9 178 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 ZNF487B1APH4 448 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 ACHEP22303 614 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 MC5RP33032 325 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 NNMTP40261 264 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 ZNF133P52736 654 aaPredicted RBP2.97□□□□□ -1.93
VPS13C-208ENST00000559119 IL10RBQ08334 325 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.97□□□□□ -1.93
VPS13C-208ENST00000559119 TIFABQ6ZNK6 161 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 LINC01006Q8NI28 216 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 SPATA33Q96N06 139 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 NAP1L5Q96NT1 182 aaPredicted RBP2.97□□□□□ -1.93
VPS13C-208ENST00000559119 ALKBH7Q9BT30 221 aaPredicted RBP2.97□□□□□ -1.93
VPS13C-208ENST00000559119 GTPBP2Q9BX10 602 aaKnown RBP2.97□□□□□ -1.93
VPS13C-208ENST00000559119 FN3KQ9H479 309 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 DPEP2Q9H4A9 486 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 NMUR1Q9HB89 426 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 NCKAP1Q9Y2A7 1128 aa2.97□□□□□ -1.93
VPS13C-208ENST00000559119 A0A1W2PPW3 197 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 E2F3O00716 465 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 WDHD1O75717 1129 aaPredicted RBP2.96□□□□□ -1.94
VPS13C-208ENST00000559119 PGM3O95394 542 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 ZNF853P0CG23 659 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 CD1EP15812 388 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 PAX3P23760 479 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 ACTN2P35609 894 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 MDH2P40926 338 aaKnown RBP2.96□□□□□ -1.94
VPS13C-208ENST00000559119 FNTAP49354 379 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 RAB28P51157 221 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 RPS27AP62979 156 aaKnown RBP2.96□□□□□ -1.94
VPS13C-208ENST00000559119 BECN1Q14457 450 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 ABRAXAS2Q15018 415 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 CELF3Q5SZQ8 465 aaKnown RBP2.96□□□□□ -1.94
VPS13C-208ENST00000559119 C9orf129Q5T035 196 aaKnown RBP2.96□□□□□ -1.94
VPS13C-208ENST00000559119 TAF3Q5VWG9 929 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 POMGNT2Q8NAT1 580 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 XXYLT1Q8NBI6 393 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 MAGEB18Q96M61 343 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 PAXXQ9BUH6 204 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 C10orf88Q9H8K7 445 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 SH3GLB2Q9NR46 395 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 PLSCR3Q9NRY6 295 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 RPS6KB2Q9UBS0 482 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 RPS6KA6Q9UK32 745 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 NAP1L2Q9ULW6 460 aaPredicted RBP2.96□□□□□ -1.94
VPS13C-208ENST00000559119 NUDCQ9Y266 331 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 FBXO7Q9Y3I1 522 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 WDR97A6NE52 1622 aa2.96□□□□□ -1.94
VPS13C-208ENST00000559119 FHAD1B1AJZ9 1412 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 TMEM150CB9EJG8 249 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 PGRMC2O15173 223 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 TSC22D2O75157 780 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 APBB3O95704 486 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 SKILP12757 684 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 ZNF17P17021 662 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 ACAT1P24752 427 aaKnown RBP2.95□□□□□ -1.94
VPS13C-208ENST00000559119 SSTR1P30872 391 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 OR3A3P47888 321 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 MAPK11Q15759 364 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 RFTN2Q52LD8 501 aaPredicted RBP2.95□□□□□ -1.94
VPS13C-208ENST00000559119 ZCCHC12Q6PEW1 402 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 MOXD1Q6UVY6 613 aa2.95□□□□□ -1.94
VPS13C-208ENST00000559119 CROCCP3Q8IVE0 287 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms