RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 GSTO2Q9H4Y5 243 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 PRDM7Q9NQW5 492 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 LANCL2Q9NS86 450 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 ARGLU1Q9NWB6 273 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-228ENST00000557302 PSD3Q9NYI0 1048 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 ZNF225Q9UK10 706 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 FBXL4Q9UKA2 621 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 PPT2Q9UMR5 302 aa12.82□□□□□ -0.36
SHMT2-228ENST00000557302 CCDC88CQ9P219 2028 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 GOLGA6L10A6NI86 522 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 RTCAO00442 366 aaKnown RBP12.81□□□□□ -0.36
SHMT2-228ENST00000557302 TRIM13O60858 407 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 B4GALT2O60909 372 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 CDC123O75794 336 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-228ENST00000557302 DNAJB5O75953 348 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 ESRRBO95718 433 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 KRT6AP02538 564 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 KRT6BP04259 564 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 ENO1P06733 434 aaKnown RBP12.81□□□□□ -0.36
SHMT2-228ENST00000557302 C8orf89P0DMQ9 161 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 HIST1H1TP22492 207 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-228ENST00000557302 ATP5A1P25705 553 aaKnown RBP12.81□□□□□ -0.36
SHMT2-228ENST00000557302 SSR2P43308 183 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 KRT6CP48668 564 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 ARFIP1P53367 373 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 RAB38P57729 211 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 KCNAB2Q13303 367 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 CUL3Q13618 768 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 RUNX2Q13950 521 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 RCN2Q14257 317 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 CASP8Q14790 479 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 SGO1Q5FBB7 561 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 TNFAIP8L3Q5GJ75 292 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 FAAH2Q6GMR7 532 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 ZNF793Q6ZN11 406 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 EXOC3L1Q86VI1 746 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 CLEC1AQ8NC01 280 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 OR11G2Q8NGC1 345 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 METTL6Q8TCB7 284 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 ADAMTS18Q8TE60 1221 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 AGAP11Q8TF27 550 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 SELENOMQ8WWX9 145 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 SREK1Q8WXA9 508 aaKnown RBP12.81□□□□□ -0.36
SHMT2-228ENST00000557302 C8orf44Q96CB5 159 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 TRIM55Q9BYV6 548 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 SSU72Q9NP77 194 aaKnown RBP12.81□□□□□ -0.36
SHMT2-228ENST00000557302 C19orf25Q9UFG5 118 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-228ENST00000557302 TUBD1Q9UJT1 453 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 ACTL7BQ9Y614 415 aa12.81□□□□□ -0.36
SHMT2-228ENST00000557302 SPTA1P02549 2419 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 MKRN2OSH3BPM6 223 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 H3BQF6 201 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 MANBAO00462 879 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 PLPP1O14494 284 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 SEMA3DO95025 777 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 SCELO95171 688 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 ETHE1O95571 254 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 SFTPCP11686 197 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 HMOX2P30519 316 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 ALDH3A1P30838 453 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 TSFMP43897 325 aaKnown RBP12.8□□□□□ -0.36
SHMT2-228ENST00000557302 CCL11P51671 97 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 EFNA3P52797 238 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 LIM2P55344 173 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 RHAGQ02094 409 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 EEF1A2Q05639 463 aaKnown RBP12.8□□□□□ -0.36
SHMT2-228ENST00000557302 LY6DQ14210 128 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 OR4C11Q6IEV9 310 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 TMEM205Q6UW68 189 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 EXD3Q8N9H8 876 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 ACOT4Q8N9L9 421 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 PLPP5Q8NEB5 264 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 BBC3Q96PG8 261 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-228ENST00000557302 MESP1Q9BRJ9 268 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 GATA5Q9BWX5 397 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-228ENST00000557302 SORBS1Q9BX66 1292 aaKnown RBP12.8□□□□□ -0.36
SHMT2-228ENST00000557302 LYRM4Q9HD34 91 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 MID1IP1Q9NPA3 183 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 ATP13A2Q9NQ11 1180 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 FARSBQ9NSD9 589 aaKnown RBP12.8□□□□□ -0.36
SHMT2-228ENST00000557302 DAPP1Q9UN19 280 aa12.8□□□□□ -0.36
SHMT2-228ENST00000557302 MRPS33Q9Y291 106 aaKnown RBP12.8□□□□□ -0.36
SHMT2-228ENST00000557302 TLN1Q9Y490 2541 aaKnown RBP12.8□□□□□ -0.36
SHMT2-228ENST00000557302 LOC102723996A0A087X1L8 192 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 A0A1W2PQ72 361 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 OR2W5A6NFC9 320 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 FAM227AF5H4B4 570 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 PRMT3O60678 531 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 ULK1O75385 1050 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 CRCPO75575 148 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 HPP00738 406 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 PDYNP01213 254 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 COX6A1P12074 109 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 AIMP2Q13155 320 aaKnown RBP12.79□□□□□ -0.36
SHMT2-228ENST00000557302 ABRAXAS2Q15018 415 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 NSDHLQ15738 373 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 SOWAHCQ53LP3 525 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-228ENST00000557302 TCHHL1Q5QJ38 904 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-228ENST00000557302 QSOX2Q6ZRP7 698 aa12.79□□□□□ -0.36
SHMT2-228ENST00000557302 LANCL3Q6ZV70 420 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms