RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TMEM169	Q96HH4	297 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	C1orf74	Q96LT6	269 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	C16orf70	Q9BSU1	422 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	TTPAL	Q9BTX7	342 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR51B5	Q9H339	312 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAM83D	Q9H4H8	585 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	RANBP3	Q9H6Z4	567 aa	Predicted RBP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	RNF121	Q9H920	327 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAM120C	Q9NX05	1096 aa	Known RBP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	NLK	Q9UBE8	527 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	PCDHB11	Q9Y5F2	797 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	MAU2	Q9Y6X3	613 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005		A0A1B0GVM2	712 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FEZF1	A0PJY2	475 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	HOXC11	O43248	304 aa	Predicted RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ADAM23	O75077	832 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	PLAT	P00750	562 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	H2AFB2	P0C5Z0	115 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ALAS2	P22557	587 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	UQCRC2	P22695	453 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	EDNRB	P24530	442 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	HOXD10	P28358	340 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	GALNT1	Q10472	559 aa	Predicted RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	RGN	Q15493	299 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	C4orf46	Q504U0	113 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ARSI	Q5FYB1	569 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF311	Q5JNZ3	666 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	PPP2R2D	Q66LE6	453 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	SUSD1	Q6UWL2	747 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CERS6	Q6ZMG9	384 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	KLB	Q86Z14	1044 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	MMAA	Q8IVH4	418 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CHPF	Q8IZ52	775 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	NAGS	Q8N159	534 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	PCSK9	Q8NBP7	692 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR10G6	Q8NH81	332 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZCCHC10	Q8TBK6	192 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	TSPEAR	Q8WU66	669 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	NKD1	Q969G9	470 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAM46A	Q96IP4	442 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	TEPSIN	Q96N21	525 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	MGLL	Q99685	303 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	AIF1L	Q9BQI0	150 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CLMP	Q9H6B4	373 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	MARK1	Q9P0L2	795 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	P2RX2	Q9UBL9	471 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	NDRG2	Q9UN36	371 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	IFT52	Q9Y366	437 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	LOC100509620	A0A075B734	347 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAM86C2P	A6NEL3	165 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	TNFRSF10A	O00220	468 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CS	O75390	466 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	RP2	O75695	350 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CPNE6	O95741	557 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	IFNG	P01579	166 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	S100A9	P06702	114 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	IL3	P08700	152 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	RPS17	P08708	135 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ETFA	P13804	333 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	HK1	P19367	917 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	GABRR2	P28476	465 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CNR2	P34972	360 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	GGT2	P36268	569 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ARFIP1	P53367	373 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	YBEY	P58557	167 aa	Predicted RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF33A	Q06730	810 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	GRSF1	Q12849	480 aa	Known RBP eCLIP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	PM20D1	Q6GTS8	502 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CCSAP	Q6IQ19	270 aa	Predicted RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CNIH2	Q6PI25	160 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	PAMR1	Q6UXH9	720 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	IL20RB	Q6UXL0	311 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CEP68	Q76N32	757 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	C17orf64	Q86WR6	236 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ARHGAP12	Q8IWW6	846 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	PGBD5	Q8N414	524 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	YIPF7	Q8N8F6	280 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CLIP3	Q96DZ5	547 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	VMP1	Q96GC9	406 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	SUSD3	Q96L08	255 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	GTPBP2	Q9BX10	602 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	IMP3	Q9NV31	184 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	OSGIN1	Q9UJX0	560 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	SARDH	Q9UL12	918 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZFR2	Q9UPR6	939 aa	Known RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	STRC	Q7RTU9	1775 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	KANTR	A0A1W2PQU2	76 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CENPBD1	B2RD01	187 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	PDCD5	O14737	125 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	MT-ND4	P03905	459 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	FGF4	P08620	206 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CEBPG	P53567	150 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	RGS8	P57771	180 aa	Predicted RBP	4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	AP3S2	P59780	193 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	RGS1	Q08116	209 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	SREBF2	Q12772	1141 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CBLB	Q13191	982 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	AQP6	Q13520	282 aa		4.79	□□□□□ -1.64
SYNE2-223	ENST00000557005	CDK10	Q15131	360 aa		4.79	□□□□□ -1.64

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