RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 PDK4Q16654 411 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 MEP1AQ16819 746 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 WHAMMP3Q1A5X7 153 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 ZXDCQ2QGD7 858 aaPredicted RBP6.9□□□□□ -1.31
SCFD1-222ENST00000556768 XKR6Q5GH73 641 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 TRIM40Q6P9F5 258 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 ANKRD37Q7Z713 158 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 PDSS2Q86YH6 399 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 SPATA6LQ8N4H0 392 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 AFAP1L2Q8N4X5 818 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 SNX31Q8N9S9 440 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 ST6GALNAC3Q8NDV1 305 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 CATSPER1Q8NEC5 780 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 SRFBP1Q8NEF9 429 aaKnown RBP6.9□□□□□ -1.31
SCFD1-222ENST00000556768 C7orf57Q8NEG2 295 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 M1APQ8TC57 530 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 GRHL3Q8TE85 626 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 UTP15Q8TED0 518 aaKnown RBP6.9□□□□□ -1.31
SCFD1-222ENST00000556768 UBE2E3Q969T4 207 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 KIAA1191Q96A73 305 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 MOCOSQ96EN8 888 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 IMMP1LQ96LU5 166 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 C16orf45Q96MC5 204 aaPredicted RBP6.9□□□□□ -1.31
SCFD1-222ENST00000556768 CENPKQ9BS16 269 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 REXO4Q9GZR2 422 aaKnown RBP6.9□□□□□ -1.31
SCFD1-222ENST00000556768 RNF32Q9H0A6 362 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 RASSF4Q9H2L5 321 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 RHBGQ9H310 441 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 COPS7BQ9H9Q2 264 aaPredicted RBP6.9□□□□□ -1.31
SCFD1-222ENST00000556768 OLAHQ9NV23 265 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 GRHL1Q9NZI5 618 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 SLC5A6Q9Y289 635 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 ACOT9Q9Y305 439 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 PCDHB14Q9Y5E9 798 aa6.9□□□□□ -1.31
SCFD1-222ENST00000556768 UTP20O75691 2785 aaKnown RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 USP9XQ93008 2570 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 PTPN13Q12923 2485 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 IGHV3-20A0A0C4DH32 117 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 CCDC189A1A4V9 331 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 BLACEA4D250 179 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 OR5H15A6NDH6 313 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 CXorf49A8MYA2 514 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 B2RBV5 119 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 KIF2AO00139 706 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 FANCGO15287 622 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 ERI3O43414 337 aaKnown RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 B3GALT2O43825 422 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 CCNT2O60583 730 aaKnown RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 RASAL1O95294 804 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 WDPCPO95876 746 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 ITGAMP11215 1152 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 CD1DP15813 335 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 PER3P56645 1201 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 BTN3A2P78410 334 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 REEP5Q00765 189 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 SLC7A5Q01650 507 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 OC90Q02509 493 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 IRF8Q02556 426 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 GUCY2DQ02846 1103 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 SLBPQ14493 270 aaKnown RBP eCLIP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 UAP1Q16222 522 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 SFT2D3Q587I9 215 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 ACER2Q5QJU3 275 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 PAPD4Q6PIY7 484 aaKnown RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 SLCO4C1Q6ZQN7 724 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 LANCL3Q6ZV70 420 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 CHSY3Q70JA7 882 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 TAOK1Q7L7X3 1001 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 ZNF572Q7Z3I7 529 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 C17orf53Q8N3J3 647 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 ANKRD53Q8N9V6 530 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 OR5T3Q8NGG3 340 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 STK35Q8TDR2 534 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 ADAMTS18Q8TE60 1221 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 PSMF1Q92530 271 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 PTCD3Q96EY7 689 aaKnown RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 UBXN10Q96LJ8 280 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 MESP1Q9BRJ9 268 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 UTP23Q9BRU9 249 aaKnown RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 MCMBPQ9BTE3 642 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 EFCAB11Q9BUY7 163 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 NPLQ9BXD5 320 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 UNKQ9C0B0 810 aaKnown RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 ROGDIQ9GZN7 287 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 ALG9Q9H6U8 611 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 NT5DC2Q9H857 520 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 MMP25Q9NPA2 562 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 SMYD2Q9NRG4 433 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 PLA2G3Q9NZ20 509 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 POLR3KQ9Y2Y1 108 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-222ENST00000556768 ANGPTL3Q9Y5C1 460 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 CSAG2Q9Y5P2 127 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 SPACA6W5XKT8 324 aa6.89□□□□□ -1.31
SCFD1-222ENST00000556768 CNTRLQ7Z7A1 2325 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 CENPEQ02224 2701 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 A0A087X1B8 175 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 CLEC18AA5D8T8 446 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 LRIT2A6NDA9 550 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 OR2W5A6NFC9 320 aa6.88□□□□□ -1.31
SCFD1-222ENST00000556768 SUPT3HB4E1H0 165 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms