RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	BRINP1	O60477	761 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	SHOX2	O60902	331 aa	Predicted RBP	11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	GBA	P04062	536 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	ADRB1	P08588	477 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	CD63	P08962	238 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	FAM58BP	P0C7Q3	252 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	RNH1	P13489	461 aa	Known RBP	11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	ACPP	P15309	386 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	SPINK2	P20155	84 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	JAK1	P23458	1154 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	TLX1	P31314	330 aa	Predicted RBP	11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	RORA	P35398	523 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	BUD31	P41223	144 aa	Predicted RBP	11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	OR1D4	P47884	311 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	IDH3A	P50213	366 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	OLR1	P78380	273 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	OCA2	Q04671	838 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	EMX2	Q04743	252 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	ZNF763	Q0D2J5	394 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	CAMK2B	Q13554	666 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	COL9A2	Q14055	689 aa	Predicted RBP	11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	MAP7	Q14244	749 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	SLC9B1	Q4ZJI4	515 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	RFTN2	Q52LD8	501 aa	Predicted RBP	11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	NOXRED1	Q6NXP6	359 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	GALNT18	Q6P9A2	607 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	PRSS41	Q7RTY9	318 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	SPATA21	Q7Z572	469 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	SPATA19	Q7Z5L4	167 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	DSEL	Q8IZU8	1212 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	NLGN4X	Q8N0W4	816 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	EFCAB3	Q8N7B9	438 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	SLC38A9	Q8NBW4	561 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	RFWD2	Q8NHY2	731 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	CDC26	Q8NHZ8	85 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	STON2	Q8WXE9	905 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	RNF31	Q96EP0	1072 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	ZNF578	Q96N58	590 aa	Predicted RBP	11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	C1orf50	Q9BV19	199 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	FAIM2	Q9BWQ8	316 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	TMEM120A	Q9BXJ8	343 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	EBPL	Q9BY08	206 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	AICDA	Q9GZX7	198 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	WDR41	Q9HAD4	459 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	LYRM4	Q9HD34	91 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	LHX9	Q9NQ69	397 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	SIRT5	Q9NXA8	310 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	HCN3	Q9P1Z3	774 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	ZNF282	Q9UDV7	671 aa	Predicted RBP	11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	PADI1	Q9ULC6	663 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	MRPS33	Q9Y291	106 aa	Known RBP	11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	PADI2	Q9Y2J8	665 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	MSRB2	Q9Y3D2	182 aa		11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	POLR3H	Q9Y535	204 aa	Predicted RBP	11.85	□□□□□ -0.51
ABCD4-223	ENST00000555904	SNRNP200	O75643	2136 aa	Known RBP	11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	ZNF195	O14628	629 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	EED	O75530	441 aa	Known RBP	11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	MED26	O95402	600 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	DLGAP3	O95886	979 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	B3GALT4	O96024	378 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	PRPS2	P11908	318 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	IDO1	P14902	403 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	PCSK2	P16519	638 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	IL10	P22301	178 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	CPN2	P22792	545 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	TPP2	P29144	1249 aa	Predicted RBP	11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	XCR1	P46094	333 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	ASMT	P46597	345 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	ARFIP2	P53365	341 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	STX1B	P61266	288 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	TRA2B	P62995	288 aa	Known RBP	11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	RPS6KA2	Q15349	733 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	MFSD4B	Q5TF39	518 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	OGFOD2	Q6N063	350 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	ZNF793	Q6ZN11	406 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	LARP4	Q71RC2	724 aa	Known RBP eCLIP	11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	GPR180	Q86V85	440 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	TMEM132C	Q8N3T6	1108 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	OR51Q1	Q8NH59	317 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	FKBP10	Q96AY3	582 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	MAEL	Q96JY0	434 aa	Known RBP	11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	CCDC28B	Q9BUN5	200 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	ZNF717	Q9BY31	904 aa	Predicted RBP	11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	MKKS	Q9NPJ1	570 aa	Predicted RBP	11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	ASCL3	Q9NQ33	180 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	MRGBP	Q9NV56	204 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	WDR70	Q9NW82	654 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	GIMAP2	Q9UG22	337 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	NXT1	Q9UKK6	140 aa	Known RBP	11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	FBXW2	Q9UKT8	454 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	DAPP1	Q9UN19	280 aa		11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	WBP11	Q9Y2W2	641 aa	Known RBP	11.84	□□□□□ -0.51
ABCD4-223	ENST00000555904	TEX51	A0A1B0GUA7	166 aa		11.83	□□□□□ -0.52
ABCD4-223	ENST00000555904	BLACE	A4D250	179 aa		11.83	□□□□□ -0.52
ABCD4-223	ENST00000555904	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	11.83	□□□□□ -0.52
ABCD4-223	ENST00000555904		E9PBE3	544 aa		11.83	□□□□□ -0.52
ABCD4-223	ENST00000555904	CLDN4	O14493	209 aa		11.83	□□□□□ -0.52
ABCD4-223	ENST00000555904	UBD	O15205	165 aa		11.83	□□□□□ -0.52
ABCD4-223	ENST00000555904	CHST10	O43529	356 aa		11.83	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms